Pre_GI: BLASTP Hits

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Query: NC_012917:985617:990685 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 990685, End: 993318, Length: 2634

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009253:897684:9235479235479261412595Desulfotomaculum reducens MI-1 chromosome, complete genometype III restriction enzyme, res subunit4e-116419
NC_010688:1192410:1223752122375212264002649Xanthomonas campestris pv. campestris, complete genomehypothetical protein4e-113409
NC_008027:775896:7838017838017864402640Pseudomonas entomophila L48, complete genomehypothetical protein3e-103377
NC_019012:61360:7172171721744742754Fibrella aestuarina BUZ 2 plasmid pFAES01, complete sequencetype III restriction protein res subunit1e-62242
NC_016616:3585435:3594295359429535970122718Dechlorosoma suillum PS chromosome, complete genomeDNA/RNA helicase3e-56220
NC_009483:3173464:3175528317552831781732646Geobacter uraniireducens Rf4 chromosome, complete genomehypothetical protein1e-50202
NC_013207:19154:3722337223397302508Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446type III restriction protein res subunit3e-47191
NC_009937:3748885:3760124376012437627152592Azorhizobium caulinodans ORS 571, complete genomeconserved hypothetical protein5e-47190
NC_014034:1330843:1337342133734213399512610Rhodobacter capsulatus SB1003 chromosome, complete genometype III restriction-modification system RcaSBIIP, Res subunit3e-46187
NC_014820:1117961:1137229113722911397272499Cenarchaeum symbiosum A, complete genomerestriction endonuclease7e-44179
NC_014355:665000:676622676622677050429Candidatus Nitrospira defluvii, complete genomehypothetical protein6e-24113
NC_009615:2503465:2518229251822925205742346Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein2e-1378.6
NC_011891:4450031:4459310445931044616132304Anaeromyxobacter dehalogenans 2CP-1, complete genomehypothetical protein1e-1172.8
NC_008702:2942246:295790729579072958251345Azoarcus sp. BH72, complete genomehypothetical protein predicted by Glimmer/Critica1e-1172.4
NC_015161:1748236:1761366176136617636242259Deinococcus proteolyticus MRP chromosome, complete genomehypothetical protein1e-0965.9
NC_008702:2942246:295737429573742957898525Azoarcus sp. BH72, complete genomehypothetical protein predicted by Glimmer/Critica4e-0963.9
NC_008435:604772:6160826160826187662685Rhodopseudomonas palustris BisA53, complete genometype III restriction enzyme, res subunit2e-0758.5
NC_013410:2253631:2265674226567422683552682Fibrobacter succinogenes subsp. succinogenes S85 chromosome,type III restriction protein res subunit3e-0654.7