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Query: NC_012917:833721:840661 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 840661, End: 842586, Length: 1926

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006138:2630338:2639223263922326411241902Desulfotalea psychrophila LSv54, complete genomehypothetical protein5e-142505
NC_011901:3072817:3081331308133130832261896Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completehypothetical protein6e-60232
NC_007643:955362:9646879646879666271941Rhodospirillum rubrum ATCC 11170, complete genomehypothetical protein9e-59228
NC_014655:1098428:1098428109842811003291902Leadbetterella byssophila DSM 17132 chromosome, complete genomehypothetical protein6e-58225
NC_017986:3407913:3418008341800834199181911Pseudomonas putida ND6 chromosome, complete genomehypothetical protein3e-57223
NC_006350:595893:6214136214136233321920Burkholderia pseudomallei K96243 chromosome 1, complete sequencehypothetical protein5e-56219
NC_012881:334250:3424093424093442981890Desulfovibrio salexigens DSM 2638, complete genomehypothetical protein7e-38159
NC_007929:1463295:1464041146404114651861146Lactobacillus salivarius subsp. salivarius UCC118, complete genomehypothetical protein5e-0653.5