Pre_GI: BLASTP Hits

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Query: NC_012917:569856:585106 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 585106, End: 585681, Length: 576

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004547:667988:690300690300690875576Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein4e-100363
NC_012880:3982383:398589639858963986471576Dickeya dadantii Ech703, complete genometranscriptional regulator, TetR family1e-67255
NC_012912:4012112:401569040156904016265576Dickeya zeae Ech1591, complete genometranscriptional regulator, TetR family2e-67255
NC_010159:741819:744834744834745409576Yersinia pestis Angola, complete genometranscriptional regulator, TetR family7e-67253
NC_005810:515744:530002530002530577576Yersinia pestis biovar Microtus str. 91001, complete genomeputative transcriptional regulator7e-67253
NC_010465:4222586:422502142250214225596576Yersinia pseudotuberculosis YPIII, complete genometranscriptional regulator, TetR family7e-67253
NC_006155:456000:470551470551471126576Yersinia pseudotuberculosis IP 32953, complete genomeputative TetR-family regulatory protein7e-67253
NC_008149:3790897:379608237960823796657576Yersinia pestis Nepal516, complete genomeTetR-family regulatory protein7e-67253
NC_009381:4169353:417453841745384175113576Yersinia pestis Pestoides F chromosome, complete genomeputative transcriptional regulator7e-67253
NC_014029:331919:403186403186403761576Yersinia pestis Z176003 chromosome, complete genomeputative TetR-family regulatory protein7e-67253
NC_017154:331921:345365345365345940576Yersinia pestis D106004 chromosome, complete genomeputative TetR-family regulatory protein7e-67253
NC_017168:751078:756263756263756838576Yersinia pestis A1122 chromosome, complete genomeputative transcriptional regulator7e-67253
NC_017265:644384:647399647399647974576Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative transcriptional regulator7e-67253
NC_013592:577831:592254592254592829576Dickeya dadantii Ech586, complete genometranscriptional regulator, TetR family9e-67252
NC_011748:4792703:480830548083054808880576Escherichia coli 55989, complete genomeputative transcriptional regulator2e-65248
AP010958:5090696:512006551200655120640576Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted transcriptional regulator2e-65248
CU928145:4792703:480830548083054808880576Escherichia coli 55989 chromosome, complete genomeputative transcriptional regulator2e-65248
NC_011745:4862218:488138148813814881956576Escherichia coli ED1a chromosome, complete genomeputative transcriptional regulator2e-65248
NC_013353:5090696:512006551200655120640576Escherichia coli O103:H2 str. 12009, complete genometranscriptional regulator2e-65248
NC_004431:4955658:497176749717674972366600Escherichia coli CFT073, complete genomeProtein yjdC2e-65248
NC_013850:4993307:501941150194115020001591Klebsiella variicola At-22 chromosome, complete genomeputative transcriptional regulator, TetR family3e-64244
NC_015663:1902344:192662719266271927202576Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative transcriptional regulator3e-64244
NC_009832:426993:451519451519452109591Serratia proteamaculans 568, complete genometranscriptional regulator, TetR family3e-64244
NC_014618:4312295:431734043173404317930591Enterobacter cloacae SCF1 chromosome, complete genomeregulatory protein TetR8e-64242
NC_016856:4563435:457960145796014580176576Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative transcriptional regulator3e-63241
NC_016831:4367000:438011343801134380688576Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative transcriptional regulator3e-63241
NC_016810:4573172:458735145873514587926576Salmonella enterica subsp. enterica serovar Typhimurium strputative transcriptional regulator3e-63241
NC_011294:4409137:442206444220644422639576Salmonella enterica subsp. enterica serovar Enteritidis strtranscriptional regulator3e-63241
NC_011205:4564645:457928345792834579858576Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853transcriptional regulator3e-63241
NC_003197:4551880:456677045667704567345576Salmonella typhimurium LT2, complete genomeputative regulatory protein3e-63241
NC_016857:4573173:458735245873524587927576Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative transcriptional regulator3e-63241
NC_016860:4649274:466416446641644664739576Salmonella enterica subsp. enterica serovar Typhimurium strputative transcriptional regulator3e-63241
NC_011147:4297513:431219643121964312771576Salmonella enterica subsp. enterica serovar Paratyphi A strtranscriptional regulator2e-63241
NC_006905:4486433:450147145014714502046576Salmonella enterica subsp. enterica serovar Choleraesuis strputative bacterial regulatory protein, merR family2e-63241
NC_015761:4188250:421535042153504215925576Salmonella bongori NCTC 12419, complete genometranscriptional regulator2e-63241
NC_021066:3703725:370725837072583707833576Raoultella ornithinolytica B6, complete genometranscriptional regulator2e-63241
NC_017046:4571833:458601245860124586587576Salmonella enterica subsp. enterica serovar Typhimurium str. 798transcriptional regulator3e-63241
NC_016863:4513106:452720745272074527782576Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative transcriptional regulator3e-63241
NC_010067:3204682:320642232064223206997576Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-63240
NC_003198:4513900:454326445432644543839576Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative transcriptional regulator4e-63240
NC_020211:379000:397545397545398120576Serratia marcescens WW4, complete genomeputative transcriptional regulator4e-63240
NC_011274:4385039:439996843999684400543576Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91transcriptional regulator6e-63239
NC_007712:532500:546200546200546775576Sodalis glossinidius str. 'morsitans', complete genomeputative transcriptional regulator9e-63239
NC_011080:4543000:456617945661794566754576Salmonella enterica subsp. enterica serovar Newport str. SL254,transcriptional regulator, TetR family1e-62239
NC_013961:3269368:327428032742803274876597Erwinia amylovora, complete genomeHTH-type transcriptional regulator yjdC1e-61235
NC_005126:4824500:483065248306524831245594Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein8e-60229
NC_013956:455000:466493466493467071579Pantoea ananatis LMG 20103 chromosome, complete genomeYjdC3e-57220
NC_010554:2789722:279282327928232793395573Proteus mirabilis HI4320, complete genomehypothetical protein5e-54210
NC_016641:3272500:328989932898993290471573Paenibacillus terrae HPL-003 chromosome, complete genomeTetR family transcriptional regulator4e-0961.2
NC_012968:507988:525242525242525805564Methylotenera mobilis JLW8, complete genometranscriptional regulator, TetR family5e-0960.8
NC_009925:1184442:120783412078341208415582Acaryochloris marina MBIC11017, complete genometranscriptional regulator, TetR family8e-0960.1
NC_015968:2195645:222134322213432221918576Enterobacter asburiae LF7a chromosome, complete genomeregulatory protein TetR1e-0859.7
NC_015947:2231493:225504722550472255616570Burkholderia sp. JV3 chromosome, complete genomeregulatory protein TetR9e-0856.6
NC_007508:5093365:510727451072745107843570Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative transcriptional regulator, TetR family2e-0652
NC_014500:1862000:187730718773071877909603Dickeya dadantii 3937 chromosome, complete genomeTetR family transcriptional regulator4e-0651.2
NC_016935:3229500:323418232341823234751570Paenibacillus mucilaginosus 3016 chromosome, complete genometranscriptional regulator1e-0550.1
NC_015690:2674187:268368126836812684250570Paenibacillus mucilaginosus KNP414 chromosome, complete genometranscriptional regulator1e-0550.1