Pre_GI: BLASTP Hits

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Query: NC_012917:569856:580457 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 580457, End: 580762, Length: 306

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012917:985617:995673995673995978306Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeCcdB protein2e-50197
NC_012880:3982383:399103039910303991335306Dickeya dadantii Ech703, complete genomeCcdB protein7e-50195
NC_012880:3529017:353600135360013536306306Dickeya dadantii Ech703, complete genomeCcdB protein2e-49194
NC_012912:4012112:402065240206524020957306Dickeya zeae Ech1591, complete genomeCcdB protein2e-47187
NC_007941:11319:507705077051096327Escherichia coli UTI89 plasmid pUTI89, complete sequenceplasmid maintenance protein CcdB3e-30130
NC_009790:42112:575065750657811306Escherichia coli E24377A plasmid pETEC_74, complete sequencecytotoxic protein CcdB3e-30130
NC_012917:569856:576167576167576376210Pectobacterium carotovorum subsp. carotovorum PC1, complete genome8e-1785.9
NC_011149:4677412:467765446776544677962309Salmonella enterica subsp. enterica serovar Agona str. SL483,cytotoxic protein CcdB3e-1270.5
NC_010102:4745949:474950947495094749817309Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-1270.5
NC_011205:4718239:472521247252124725520309Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853cytotoxic protein CcdB3e-1270.5
NC_011274:4538722:454569545456954546003309Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91cytotoxic protein CcdB3e-1270.5
NC_011294:4560902:456787545678754568183309Salmonella enterica subsp. enterica serovar Enteritidis strcytotoxic protein CcdB3e-1270.5
NC_016831:4517850:452502345250234525331309Salmonella enterica subsp. enterica serovar Gallinarum/pullorumcytotoxic protein ccdb (letb protein) (protein g) (lynb)4e-1270.1
NC_014500:3175283:318875131887513189065315Dickeya dadantii 3937 chromosome, complete genomeputative toxin of gyrase inhibiting toxin-antitoxin system8e-1268.9
NC_014500:3097362:316555031655503165864315Dickeya dadantii 3937 chromosome, complete genomeputative toxin of gyrase inhibiting toxin-antitoxin system2e-1167.8
NC_012691:3126500:314983431498343150151318Tolumonas auensis DSM 9187, complete genomeCcdB protein1e-1065.1
NC_009832:1664238:169503916950391695353315Serratia proteamaculans 568, complete genomeCcdB protein4e-1063.5
NC_014500:842493:863499863499863807309Dickeya dadantii 3937 chromosome, complete genomeputative toxin of gyrase inhibiting toxin-antitoxin system4e-1063.5
NC_018678:2140182:214813621481362148453318Alteromonas macleodii str. 'English Channel 673' chromosome,CcdB-like toxin protein9e-0958.9
NC_014006:924417:934296934296934595300Sphingobium japonicum UT26S chromosome 1, complete genomeCcdB-like toxin protein5e-0753.1