Pre_GI: BLASTP Hits

Some Help

Query: NC_012917:3684840:3702900 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 3702900, End: 3704936, Length: 2037

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012917:3684840:3700762370076237028882127Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeAnkyrin1e-93344
NC_013421:3752619:3770347377034737724972151Pectobacterium wasabiae WPP163, complete genomeAnkyrin8e-87322
NC_012225:2333500:2334028233402823350321005Brachyspira hyodysenteriae WA1, complete genomeputative ankyrin repeat-containing protein3e-0654.7
NC_010830:1836984:1842930184293018476874758Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein3e-0654.3