Pre_GI: BLASTP Hits

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Query: NC_012917:3684840:3700318 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 3700318, End: 3700692, Length: 375

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:3752619:376992237699223770296375Pectobacterium wasabiae WPP163, complete genometranscriptional regulator Crl5e-64242
NC_004547:3866439:388395338839533884327375Erwinia carotovora subsp. atroseptica SCRI1043, complete genomecurlin genes transcriptional activator7e-63238
NC_020211:996497:100036710003671000768402Serratia marcescens WW4, complete genomesigma factor-binding protein1e-38158
NC_015761:299386:301235301235301636402Salmonella bongori NCTC 12419, complete genomecurlin genes transcriptional activator2e-38157
NC_004431:364000:365957365957366358402Escherichia coli CFT073, complete genomeCurlin genes transcriptional activatory protein2e-38157
NC_010498:301000:302373302373302774402Escherichia coli SMS-3-5, complete genomesigma factor-binding protein Crl5e-38156
NC_008563:287136:290706290706291107402Escherichia coli APEC O1, complete genomecrl transcriptional regulator4e-38156
NC_007946:289425:290727290727291128402Escherichia coli UTI89, complete genomecrl transcriptional regulator4e-38156
NC_011745:291422:292724292724293125402Escherichia coli ED1a chromosome, complete genomeDNA-binding transcriptional regulator Crl4e-38156
NC_007384:307013:310583310583310984402Shigella sonnei Ss046, complete genometranscriptional regulator of cryptic csgA gene for curli surface fibers3e-38156
NC_013361:313540:317110317110317511402Escherichia coli O26:H11 str. 11368 chromosome, complete genomeDNA-binding transcriptional regulator Crl3e-38156
NC_010634:1056441:107285910728591073260402Yersinia pseudotuberculosis PB1/+, complete genometranscriptional regulator Crl7e-38155
NC_010159:3502350:350598535059853506386402Yersinia pestis Angola, complete genometranscriptional activator Crl7e-38155
NC_005810:754340:770814770814771215402Yersinia pestis biovar Microtus str. 91001, complete genomeDNA-binding transcriptional regulator Crl7e-38155
NC_008149:1002453:101807710180771018478402Yersinia pestis Nepal516, complete genomecurlin genes regulatory protein7e-38155
NC_008150:3015000:301878130187813019182402Yersinia pestis Antiqua, complete genomecurlin genes regulatory protein7e-38155
NC_010465:3597000:359982735998273600228402Yersinia pseudotuberculosis YPIII, complete genometranscriptional regulator Crl7e-38155
NC_004088:1075454:109107810910781091479402Yersinia pestis KIM, complete genometranscriptional regulator of cryptic csgA gene for curli surface fibers7e-38155
NC_003143:3583468:358710335871033587504402Yersinia pestis CO92, complete genomecurlin genes regulatory protein7e-38155
NC_006155:1074298:109071610907161091117402Yersinia pseudotuberculosis IP 32953, complete genometranscriptional regulator of cryptic genes for curli formation and fibronectin binding7e-38155
NC_014029:3633955:363759036375903637991402Yersinia pestis Z176003 chromosome, complete genomecurlin genes regulatory protein7e-38155
NC_017154:3576256:357989135798913580292402Yersinia pestis D106004 chromosome, complete genomecurlin genes regulatory protein7e-38155
NC_017160:3560153:356378835637883564189402Yersinia pestis D182038 chromosome, complete genomecurlin genes regulatory protein7e-38155
NC_017168:2158839:217446321744632174864402Yersinia pestis A1122 chromosome, complete genomeDNA-binding transcriptional regulator Crl7e-38155
NC_017265:3375463:337873333787333379134402Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,DNA-binding transcriptional regulator7e-38155
NC_009708:3542336:354597135459713546372402Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeCrl family transcriptional regulator3e-37153
NC_014618:3700640:371637437163743716775402Enterobacter cloacae SCF1 chromosome, complete genometranscriptional regulator Crl7e-37152
NC_020260:3004500:302027230202723020661390Cronobacter sakazakii Sp291, complete genomeDNA-binding transcriptional regulator Crl5e-37152
NC_009381:3228500:323136732313673231768402Yersinia pestis Pestoides F chromosome, complete genomeDNA-binding transcriptional regulator Crl1e-36151
NC_013282:923500:925567925567925956390Cronobacter turicensis, complete genomeSigma factor-binding protein crl3e-36150
NC_020063:3690308:374573937457393746140402Enterobacteriaceae bacterium strain FGI 57, complete genomeTranscriptional regulator Crl4e-36149
NC_016514:891772:895332895332895757426Enterobacter cloacae EcWSU1 chromosome, complete genomeSigma factor-binding protein crl5e-35146
NC_013716:357928:359230359230359631402Citrobacter rodentium ICC168, complete genomesigma factor-binding protein crl (curlin genes transcriptional activator)1e-34144
NC_013508:876431:880255880255880656402Edwardsiella tarda EIB202, complete genomeDNA-binding transcriptional regulator9e-33138
NC_014121:1101093:110244311024431102754312Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein4e-29126
NC_017328:303987:305418305418305690273Shigella flexneri 2002017 chromosome, complete genomeSigma factor-binding protein crl5e-1683.2