Pre_GI: BLASTP Hits

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Query: NC_012917:3684840:3696452 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 3696452, End: 3696527, Length: 76

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:366905:36827136827136834676Salmonella enterica subsp. enterica serovar Typhimurium str. 798tRNA-Thr2e-0650.8
NC_004337:309833:31120131120131127676Shigella flexneri 2a str. 301, complete genometRNA-Thr2e-0650.8
NC_020063:3690308:37416753741675374175076Enterobacteriaceae bacterium strain FGI 57, complete genometRNA-Thr2e-0650.8
NC_004431:364000:37022437022437029976Escherichia coli CFT073, complete genometRNA-Thr2e-0650.8
NC_006905:368942:37275737275737283276Salmonella enterica subsp. enterica serovar Choleraesuis strtRNA-Thr2e-0650.8
NC_010498:301000:30664030664030671576Escherichia coli SMS-3-5, complete genometRNA-Thr2e-0650.8
NC_014500:3744705:37648183764818376489376Dickeya dadantii 3937 chromosome, complete genometRNA-Thr2e-0650.8
NC_014121:1101093:11078011107801110787676Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completetRNA-Thr2e-0650.8
NC_013508:876431:88453988453988461476Edwardsiella tarda EIB202, complete genometRNA-Thr2e-0650.8
NC_004741:310382:31375331375331382876Shigella flexneri 2a str. 2457T, complete genometRNA-Thr2e-0650.8
NC_020260:3004500:30162373016237301631276Cronobacter sakazakii Sp291, complete genometRNA-Thr2e-0650.8
NC_004547:3866439:38801693880169388024476Erwinia carotovora subsp. atroseptica SCRI1043, complete genometRNA-Thr2e-0650.8
NC_009648:293052:31713131713131720676Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genometRNA-Thr2e-0650.8
NC_013421:3752619:37645023764502376457776Pectobacterium wasabiae WPP163, complete genometRNA-Thr2e-0650.8
NC_011083:374000:37676037676037683576Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,tRNA-Thr2e-0650.8
NC_020211:996497:10034401003440100351576Serratia marcescens WW4, complete genometRNA-Thr2e-0650.8
NC_007384:307013:31484931484931492476Shigella sonnei Ss046, complete genometRNA-Thr2e-0650.8
NC_016860:364981:36879736879736887276Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Thr2e-0650.8
NC_016857:366908:36827436827436834976Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74tRNA-Thr2e-0650.8
NC_016856:365665:36948136948136955676Salmonella enterica subsp. enterica serovar Typhimurium str. 14028StRNA-Thr2e-0650.8
NC_016832:2581145:25998402599840259991576Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,tRNA-Thr2e-0650.8
NC_016514:891772:89970789970789978276Enterobacter cloacae EcWSU1 chromosome, complete genometRNA-Thr2e-0650.8
NC_014618:3700640:37123383712338371241376Enterobacter cloacae SCF1 chromosome, complete genometRNA-Thr2e-0650.8
NC_013361:313540:32137632137632145176Escherichia coli O26:H11 str. 11368 chromosome, complete genometRNA-Thr2e-0650.8
NC_012731:1088321:11021671102167110224276Klebsiella pneumoniae NTUH-K2044 chromosome, complete genometRNA-Thr2e-0650.8
NC_011745:291422:29699129699129706676Escherichia coli ED1a chromosome, complete genometRNA-Thr2e-0650.8
NC_011742:291237:29506429506429513976Escherichia coli S88 chromosome, complete genometRNA-Thr2e-0650.8
NC_011283:4438500:44451054445105444518076Klebsiella pneumoniae 342 chromosome, complete genometRNA-Thr2e-0650.8
NC_011205:371001:37236437236437243976Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853tRNA-Thr2e-0650.8
NC_009800:289000:29174129174129181676Escherichia coli HS, complete genometRNA-Thr2e-0650.8
NC_004631:2584244:26029392602939260301476Salmonella enterica subsp. enterica serovar Typhi Ty2, completetRNA-Thr2e-0650.8
NC_021066:3028421:30384033038403303847876Raoultella ornithinolytica B6, complete genometRNA-Thr2e-0650.8