Pre_GI: BLASTP Hits

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Query: NC_012917:3684840:3690808 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 3690808, End: 3691569, Length: 762

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012917:833721:839217839217839978762Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein4e-132470
NC_009436:3367194:337950033795003380231732Enterobacter sp. 638, complete genomehypothetical protein1e-32139
NC_021066:5342127:535991653599165360653738Raoultella ornithinolytica B6, complete genomehypothetical protein3e-32138
NC_010102:2862178:286300328630032863740738Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-31135
NC_016810:2871689:289526428952642896067804Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage capsid protein5e-31134
NC_011147:4460726:446072644607264461463738Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein8e-31134
NC_016818:1291665:130313713031371303886750Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completehypothetical protein9e-31133
NC_016845:575123:588482588482589219738Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein3e-30132
NC_011080:2870428:288343428834342884129696Salmonella enterica subsp. enterica serovar Newport str. SL254,glycoprotein 31e-29130
NC_011740:448000:453384453384454184801Escherichia fergusonii ATCC 35469, complete genomeGlycoprotein 3 (Capsid size determination protein)2e-29129
NC_013361:4959323:496073749607374961471735Escherichia coli O26:H11 str. 11368 chromosome, complete genomecapsid size determining protein4e-29128
NC_007613:4217557:422250342225034223237735Shigella boydii Sb227, complete genomehypothetical protein4e-29128
NC_010498:4072681:408652440865244087258735Escherichia coli SMS-3-5, complete genomeglycoprotein 3, capsid size determination protein Sid8e-29127
NC_016857:2871689:289526428952642895959696Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74glycoprotein 38e-29127
NC_015061:1251905:126414312641431264892750Rahnella sp. Y9602 chromosome, complete genomehypothetical protein6e-29127
NC_010468:49074:504805048051214735Escherichia coli ATCC 8739, complete genomehypothetical protein1e-28126
NC_010468:1130000:115162311516231152357735Escherichia coli ATCC 8739, complete genomehypothetical protein4e-28125
NC_014121:677799:690064690064690807744Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative phage capsid protein4e-27121
NC_003198:4676536:468956646895664690426861Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative phage capsid protein5e-27121
NC_004631:4661000:467245546724554673315861Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative phage capsid protein5e-27121
NC_004547:3866439:387407138740713874256186Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative phage capsid protein (partial)8e-26117
NC_006511:4465495:446549544654954466229735Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC8e-25114
NC_013508:3188978:324857332485733249376804Edwardsiella tarda EIB202, complete genomeputative phage capsid protein1e-24113
NC_020211:996497:100840610084061009188783Serratia marcescens WW4, complete genomeNAD-dependent aldehyde dehydrogenase6e-23107
NC_009778:567000:597311597311598021711Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein8e-1890.9
NC_013508:3593000:361063436106343610996363Edwardsiella tarda EIB202, complete genomehypothetical protein4e-1272
NC_004547:913553:922240922240922566327Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative phage capsid protein (partial)4e-0962