Pre_GI: BLASTP Hits

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Query: NC_012917:3684840:3689215 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 3689215, End: 3689756, Length: 542

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012917:833721:837635837635838179545Pectobacterium carotovorum subsp. carotovorum PC1, complete genome5e-62236
NC_014306:4376012:441031944103194410858540Erwinia billingiae Eb661, complete genomePhage CI repressor9e-28122
NC_016810:2871689:289680228968022897353552Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage protein2e-2098.6
NC_009436:3367194:338105733810573381608552Enterobacter sp. 638, complete genomeCI repressor7e-1890.1
NC_014306:4901390:493954549395454940084540Erwinia billingiae Eb661, complete genomePutative prophage CI repressor1e-1789.4
NC_010468:49074:490744907449664591Escherichia coli ATCC 8739, complete genomeputative bacteriophage protein2e-1685.1
NC_010468:1130000:115021811502181150808591Escherichia coli ATCC 8739, complete genomeputative bacteriophage protein2e-1685.1
NC_014500:2019113:204330220433022044042741Dickeya dadantii 3937 chromosome, complete genomeputative prophage protein2e-1582
NC_013008:306953:323638323638324195558Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeregulator encoded in prophage CP-933I3e-1478.2
NC_002695:301939:318446318446319003558Escherichia coli O157:H7 str. Sakai, complete genomeputative CI repressor3e-1478.2
NC_002655:301940:318447318447319004558Escherichia coli O157:H7 EDL933, complete genomeputative regulator encoded in prophage CP-933I3e-1478.2
NC_013941:338121:359420359420359977558Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeCI repressor3e-1477.8
NC_013508:3593000:360692136069213607250330Edwardsiella tarda EIB202, complete genomeputative bacteriophage protein1e-1376.3
NC_007613:4217557:422108942210894221688600Shigella boydii Sb227, complete genomeputative bacteriophage protein4e-1270.9
NC_013361:4959323:495932349593234959922600Escherichia coli O26:H11 str. 11368 chromosome, complete genomephage repressor protein4e-1270.9
NC_007712:2897000:290163729016372902236600Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein3e-0858.2
NC_009801:1419324:142227414222741423128855Escherichia coli E24377A, complete genomephage regulatory protein, Rha family4e-0857.8
NC_014121:1101093:111258111125811112976396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completephage immunity repressor protein6e-0753.5
NC_004088:3382148:339650633965063397048543Yersinia pestis KIM, complete genomehypothetical protein2e-0652.4
NC_008150:650899:654513654513655055543Yersinia pestis Antiqua, complete genomeputative prophage protein2e-0652.4
NC_003143:1233128:123777712377771238319543Yersinia pestis CO92, complete genomeputative prophage protein2e-0652.4
NC_008149:3251196:326555532655553266097543Yersinia pestis Nepal516, complete genomeprophage protein2e-0652.4
NC_005810:1130251:114461011446101145152543Yersinia pestis biovar Microtus str. 91001, complete genomeputative prophage protein2e-0652.4
NC_009381:2939782:295414029541402954682543Yersinia pestis Pestoides F chromosome, complete genomeprophage protein2e-0652.4
NC_017168:4155143:415979341597934160335543Yersinia pestis A1122 chromosome, complete genomeputative prophage protein2e-0652.4
NC_017265:1136000:113910711391071139649543Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative prophage protein2e-0652.4
NC_013592:2703327:270576327057632706277515Dickeya dadantii Ech586, complete genomehypothetical protein5e-0650.8
NC_014500:443874:459613459613460152540Dickeya dadantii 3937 chromosome, complete genomeputative prophage protein8e-0650.1