Pre_GI: BLASTP Hits

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Query: NC_012917:3684840:3689028 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 3689028, End: 3689222, Length: 195

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012917:833721:837448837448837642195Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein6e-27119
NC_004547:1873390:192164819216481921920273Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein5e-1373.2
NC_012912:4194821:419766041976604198199540Dickeya zeae Ech1591, complete genomeprophage protein1e-1272
NC_014500:3744705:376033637603363760857522Dickeya dadantii 3937 chromosome, complete genomeputative prophage protein2e-1271.2
NC_012880:2778795:278202427820242782224201Dickeya dadantii Ech703, complete genomehypothetical protein3e-1270.9
NC_013592:4295449:430045943004594300995537Dickeya dadantii Ech586, complete genomePhage P4, Ash protein-like protein3e-1270.9
NC_012880:4117376:411990341199034120442540Dickeya dadantii Ech703, complete genomeprophage protein4e-1270.1
NC_014500:443874:459613459613460152540Dickeya dadantii 3937 chromosome, complete genomeputative prophage protein1e-1168.9
NC_017047:4298207:430498143049814305202222Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein2e-1167.8
NC_015061:4203767:421104042110404211261222Rahnella sp. Y9602 chromosome, complete genomehypothetical protein2e-1167.8
NC_016818:4215836:422674642267464226967222Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completehypothetical protein3e-1167.4
NC_012917:1840172:187051818705181870697180Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein4e-1166.6
NC_014500:2019113:204330220433022044042741Dickeya dadantii 3937 chromosome, complete genomeputative prophage protein3e-1063.5
NC_017265:1136000:113910711391071139649543Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative prophage protein2e-0960.8
NC_013592:2703327:270627027062702706458189Dickeya dadantii Ech586, complete genomehypothetical protein3e-0960.8
NC_004088:3382148:339650633965063397048543Yersinia pestis KIM, complete genomehypothetical protein2e-0960.8
NC_008150:650899:654513654513655055543Yersinia pestis Antiqua, complete genomeputative prophage protein2e-0960.8
NC_003143:1233128:123777712377771238319543Yersinia pestis CO92, complete genomeputative prophage protein2e-0960.8
NC_008149:3251196:326555532655553266097543Yersinia pestis Nepal516, complete genomeprophage protein2e-0960.8
NC_005810:1130251:114461011446101145152543Yersinia pestis biovar Microtus str. 91001, complete genomeputative prophage protein2e-0960.8
NC_009381:2939782:295414029541402954682543Yersinia pestis Pestoides F chromosome, complete genomeprophage protein2e-0960.8
NC_017168:4155143:415979341597934160335543Yersinia pestis A1122 chromosome, complete genomeputative prophage protein2e-0960.8
NC_010159:1417993:142192914219291422117189Yersinia pestis Angola, complete genomeputative prophage protein4e-0960.1
NC_008800:4488112:449851244985124498793282Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein1e-0652