Pre_GI: BLASTP Hits

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Query: NC_012917:3565268:3579934 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 3579934, End: 3580158, Length: 225

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017047:1551836:155901615590161559234219Rahnella aquatilis HX2 chromosome, complete genomephage/conjugal plasmid C-4 type zinc finger protein, TraR family4e-1786.7
NC_016818:1605918:161306616130661613284219Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completephage/conjugal plasmid C-4 type zinc finger protein, TraR family4e-1786.7
NC_015061:1598920:160610016061001606318219Rahnella sp. Y9602 chromosome, complete genomephage/conjugal plasmid C-4 type zinc finger protein, TraR family4e-1786.7
NC_014837:2458780:247245224724522472676225Pantoea sp. At-9b chromosome, complete genomeTraR/DksA family transcriptional regulator6e-1786.3
NC_009436:3807420:381093238109323811153222Enterobacter sp. 638, complete genomeTraR/DksA family transcriptional regulator2e-1684.3
NC_009648:3803622:383141638314163831637222Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage protein6e-1682.8
NC_011147:2676972:268742626874262687653228Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein3e-1580.5
NC_003198:4453457:450366745036674503894228Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein3e-1580.5
NC_006511:2677964:269189026918902692117228Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein3e-1580.5
NC_011149:2802199:281653628165362816763228Salmonella enterica subsp. enterica serovar Agona str. SL483,C4-type zinc finger protein, DksA/TraR family3e-1580.1
NC_003197:2870268:287354228735422873769228Salmonella typhimurium LT2, complete genomehypothetical protein3e-1580.1
NC_011205:2938356:295172829517282951955228Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853DksA/TraR family protein3e-1580.1
NC_016860:2896254:289710828971082897335228Salmonella enterica subsp. enterica serovar Typhimurium strC4-type zinc finger protein, DksA/TraR family3e-1580.1
NC_020181:5182568:519321951932195193440222Enterobacter aerogenes EA1509E, complete genomeHypothetical Zinc-finger containing protein6e-1579.3
NC_020260:312805:321303321303321530228Cronobacter sakazakii Sp291, complete genomehypothetical protein7e-1579.3
NC_011601:846358:858374858374858601228Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeTraR/DksA family transcriptional regulator9e-1579
NC_011742:2823000:282714028271402827367228Escherichia coli S88 chromosome, complete genomeDksA/TraR protein family with a zinc finger8e-1579
NC_008800:1870596:188442018844201884644225Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein2e-1477.8
NC_009436:1466580:147985914798591480086228Enterobacter sp. 638, complete genomeTraR/DksA family transcriptional regulator2e-1477.8
NC_016845:4046142:405365340536534053880228Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein3e-1477.4
NC_013282:3389619:340304934030493403273225Cronobacter turicensis, complete genomeUncharacterized 8.5 kDa protein in gpA 5'region9e-1475.5
NC_013956:3525711:354118635411863541413228Pantoea ananatis LMG 20103 chromosome, complete genomeCP808e-1475.5
NC_014306:103545:110121110121110348228Erwinia billingiae Eb661, complete genomehypothetical protein1e-1375.1
NC_016810:2871689:288448528844852884712228Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage protein4e-1270.1
NC_014306:1244721:125134012513401251567228Erwinia billingiae Eb661, complete genomehypothetical protein7e-1269.3
NC_015061:596247:614243614243614467225Rahnella sp. Y9602 chromosome, complete genomephage/conjugal plasmid C-4 type zinc finger protein, TraR family1e-1168.2
NC_010694:614985:631610631610631906297Erwinia tasmaniensis, complete genomehypothetical protein6e-1166.2
NC_009801:995396:100381510038151004039225Escherichia coli E24377A, complete genomeC4-type zinc finger protein, DksA/TraR family7e-1165.9
NC_012967:2105251:211903021190302119254225Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein2e-1064.7
NC_017047:4037674:404784940478494048073225Rahnella aquatilis HX2 chromosome, complete genomephage/conjugal plasmid C-4 type zinc finger protein, TraR family4e-1063.5
NC_011353:2825500:283600628360062836230225Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeC4-type zinc finger protein, DksA/TraR family8e-1062.4
NC_013008:2824511:283498628349862835210225Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein8e-1062.4
NC_020418:3022891:303850130385013038722222Morganella morganii subsp. morganii KT, complete genomehypothetical protein5e-0959.7
NC_014837:3766426:378008137800813780308228Pantoea sp. At-9b chromosome, complete genomeTraR/DksA family transcriptional regulator6e-0959.7
NC_020211:4598217:461214846121484612372225Serratia marcescens WW4, complete genometranscriptional regulator, TraR/DksA family5e-0753.1
NC_017047:2079368:208374820837482083957210Rahnella aquatilis HX2 chromosome, complete genomephage/conjugal plasmid C-4 type zinc finger protein, TraR family5e-0753.1
NC_004547:1873390:188021818802181880427210Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative conjugal transfer protein6e-0752.8
NC_004578:3849835:385660138566013856828228Pseudomonas syringae pv. tomato str. DC3000, complete genomeC4-type zinc finger protein, DksA/TraR family3e-0650.4
NC_016830:5031819:504084950408495041076228Pseudomonas fluorescens F113 chromosome, complete genomeC4-type zinc finger protein, DksA/TraR family4e-0650.4
NC_016818:1795576:183433418343341834543210Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completephage/conjugal plasmid C-4 type zinc finger protein, TraR family7e-0649.3
NC_013421:1819036:184086718408671841076210Pectobacterium wasabiae WPP163, complete genometranscriptional regulator, TraR/DksA family8e-0649.3