Pre_GI: BLASTP Hits

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Query: NC_012917:3565268:3566326 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 3566326, End: 3566664, Length: 339

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:2805877:282490528249052825243339Salmonella enterica subsp. enterica serovar Choleraesuis strribosome associated factor, stabilizes ribosomes against dissociation1e-48191
NC_011080:2789744:281019328101932810531339Salmonella enterica subsp. enterica serovar Newport str. SL254,ribosomal subunit interface protein1e-48191
NC_003198:2703013:272354827235482723886339Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative sigma(54) modulation protein1e-48191
NC_011149:2701916:272110327211032721441339Salmonella enterica subsp. enterica serovar Agona str. SL483,ribosomal subunit interface protein1e-48191
NC_013850:1198134:119954911995491199884336Klebsiella variicola At-22 chromosome, complete genomeribosomal subunit interface protein1e-48191
CP002185:2889656:290808629080862908427342Escherichia coli W, complete genomecold shock protein associated with 30S ribosomal subunit2e-48190
CU928160:2785792:280422028042202804561342Escherichia coli IAI1 chromosome, complete genomecold shock protein associated with 30S ribosomal subunit2e-48190
CP002516:1196000:119743011974301197771342Escherichia coli KO11, complete genomesigma 54 modulation protein/ribosomal protein S30EA2e-48190
NC_009648:3192483:321044032104403210769330Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genometranslation inhibitor protein RaiA3e-47186
NC_016901:1527877:153977215397721540128357Shewanella baltica OS678 chromosome, complete genomesigma 54 modulation protein/ribosomal protein S30EA3e-22103
NC_009052:1394000:140539914053991405755357Shewanella baltica OS155, complete genomesigma 54 modulation protein/ribosomal protein S30EA3e-22103
NC_009665:1495473:150815715081571508513357Shewanella baltica OS185 chromosome, complete genomesigma 54 modulation protein/ribosomal protein S30EA3e-22103
NC_011184:597496:598790598790599143354Vibrio fischeri MJ11 chromosome I, complete sequenceribosomal subunit interface protein9e-1889
NC_009656:5185704:518931351893135189621309Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein6e-1475.9
NC_019897:128610:193364193364193918555Thermobacillus composti KWC4 chromosome, complete genomeribosomal subunit interface protein2e-1064.3
NC_015660:391627:413815413815414366552Geobacillus thermoglucosidasius C56-YS93 chromosome, completesigma 54 modulation protein/30S ribosomal protein S30EA2e-1064.3
NC_014650:376070:402434402434402985552Geobacillus sp. Y4.1MC1 chromosome, complete genomesigma 54 modulation protein/30S ribosomal protein S30EA2e-1064.3
NC_014829:3822125:385033638503363850899564Bacillus cellulosilyticus DSM 2522 chromosome, complete genomesigma 54 modulation protein/ribosomal protein S30EA7e-0959.3
NC_021182:4427468:442746844274684428004537Clostridium pasteurianum BC1, complete genomeribosomal subunit interface protein7e-0959.3
NC_009437:1481064:149081514908151491363549Caldicellulosiruptor saccharolyticus DSM 8903, complete genomesigma 54 modulation protein/ribosomal protein S30EA1e-0858.2
NC_013939:1023443:104295810429581043491534Deferribacter desulfuricans SSM1, complete genomesigma 54 modulation protein/ribosomal protein S30EA2e-0857.8
NC_014758:1489761:149427114942711494807537Calditerrivibrio nitroreducens DSM 19672 chromosome, completesigma 54 modulation protein/ribosomal protein s30ea3e-0857.4
NC_014831:218696:223839223839224402564Thermaerobacter marianensis DSM 12885 chromosome, complete genomeSSU ribosomal protein S30P;sigma 54 modulation protein5e-0856.6
NC_013791:1082951:108295110829511083508558Bacillus pseudofirmus OF4 chromosome, complete genomeribosomal protein S30AE familyprotein6e-0856.2
NC_014721:508000:517901517901518446546Caldicellulosiruptor kristjanssonii 177R1B chromosome, completesigma 54 modulation protein/ribosomal protein s30ea6e-0856.2
NC_015949:1957185:197012119701211970666546Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomesigma 54 modulation protein/30S ribosomal protein S30EA6e-0856.2
NC_009922:2672396:269269126926912693236546Alkaliphilus oremlandii OhILAs, complete genomesigma 54 modulation protein/ribosomal protein S30EA7e-0855.8
NC_015601:1107961:114892111489211149463543Erysipelothrix rhusiopathiae str. Fujisawa, complete genomeribosomal protein S30Ae/sigma 54 modulation protein7e-0855.8
NC_015731:990000:991506991506991835330Nitrosomonas sp. Is79A3 chromosome, complete genomesigma 54 modulation protein/30S ribosomal protein S30EA9e-0855.5
NC_010718:2337209:236053523605352361071537Natranaerobius thermophilus JW/NM-WN-LF, complete genomesigma 54 modulation protein, SSU ribosomal protein S30P1e-0755.5
NC_011296:229494:237083237083237604522Thermodesulfovibrio yellowstonii DSM 11347, complete genomeSSU ribosomal protein S30P1e-0755.1
NC_019978:2220863:223713922371392237684546Halobacteroides halobius DSM 5150, complete genomeribosomal subunit interface protein2e-0754.7
NC_004193:2553630:255798125579812558538558Oceanobacillus iheyensis HTE831, complete genomehypothetical protein2e-0754.3
NC_017353:2129738:216823721682372168809573Staphylococcus lugdunensis N920143, complete genomeputative S30EA family ribosomal protein3e-0754.3
NC_015873:2294312:229882822988282299352525Megasphaera elsdenii DSM 20460, complete genomeribosomal subunit interface protein3e-0753.9
NC_016771:4882886:488953848895384890080543Bacillus cereus NC7401, complete genomeribosomal subunit interface protein3e-0753.9
NC_011969:4841358:487202648720264872568543Bacillus cereus Q1 chromosome, complete genomeribosomal subunit interface protein3e-0753.9
NC_011658:4925346:493721549372154937757543Bacillus cereus AH187 chromosome, complete genomeribosomal subunit Interface protein3e-0753.9
NC_003997:4876415:491113849111384911680543Bacillus anthracis str. Ames, complete genomeribosomal subunit interface protein4e-0753.5
NC_006274:4940922:497224749722474972789543Bacillus cereus E33L, complete genomeribosomal subunit interface protein4e-0753.5
NC_008600:4898000:492758549275854928127543Bacillus thuringiensis str. Al Hakam, complete genomeribosomal subunit interface protein4e-0753.5
NC_005957:4904000:491592349159234916465543Bacillus thuringiensis serovar konkukian str. 97-27, completeribosomal subunit interface protein4e-0753.5
NC_003909:4854379:488419748841974884739543Bacillus cereus ATCC 10987, complete genomeribosomal subunit interface protein4e-0753.5
NC_017200:4995075:503104650310465031588543Bacillus thuringiensis serovar finitimus YBT-020 chromosome,ribosomal subunit interface protein4e-0753.5
NC_007530:4877500:491126449112644911806543Bacillus anthracis str. 'Ames Ancestor', complete genomeribosomal subunit interface protein4e-0753.5
NC_014335:4848389:486075348607534861295543Bacillus cereus biovar anthracis str. CI chromosome, completeribosomal subunit interface protein4e-0753.5
NC_012472:4908245:493785149378514938393543Bacillus cereus 03BB102, complete genomeribosomal subunit interface protein4e-0753.5
NC_005945:4898841:491247549124754913017543Bacillus anthracis str. Sterne, complete genomeribosomal subunit interface protein4e-0753.5
NC_011773:4940921:497245649724564972998543Bacillus cereus AH820 chromosome, complete genomeribosomal subunit interface protein4e-0753.5
NC_012581:4882525:491358749135874914129543Bacillus anthracis str. CDC 684 chromosome, complete genomeribosomal subunit interface protein4e-0753.5
NC_012659:4877410:491116449111644911706543Bacillus anthracis str. A0248, complete genomeribosomal subunit interface protein4e-0753.5
NC_016779:4864056:489258448925844893126543Bacillus cereus F837/76 chromosome, complete genomeRibosomal subunit interface protein4e-0753.5
NC_017208:5143500:515552651555265156068543Bacillus thuringiensis serovar chinensis CT-43 chromosome, completesigma (54) modulation protein/30S ribosomal protein S304e-0753.5
NC_011725:5075285:510592451059245106466543Bacillus cereus B4264 chromosome, complete genomeribosomal subunit interface protein7e-0752.8
NC_014171:4959248:499549249954924996034543Bacillus thuringiensis BMB171 chromosome, complete genomesigma (54) modulation protein/SSU ribosomal protein S30P7e-0752.8
NC_014221:38000:434864348644058573Truepera radiovictrix DSM 17093 chromosome, complete genomeribosomal subunit interface protein7e-0752.8
NC_011772:5021404:505237050523705052912543Bacillus cereus G9842, complete genomeribosomal subunit interface protein8e-0752.4
NC_010184:4909183:494423049442304944772543Bacillus weihenstephanensis KBAB4, complete genomesigma 54 modulation protein/ribosomal protein S30EA1e-0652
NC_013406:6568273:657447565744756575041567Paenibacillus sp. Y412MC10 chromosome, complete genomesigma 54 modulation protein/ribosomal protein S30EA4e-0650.1
NC_010611:679862:694143694143694481339Acinetobacter baumannii ACICU, complete genomeRibosome-associated protein Y (PSrp-1)5e-0650.1
NC_010410:3166279:317001031700103170363354Acinetobacter baumannii AYE, complete genomeputative sigma(54) modulation protein RpoX5e-0649.7
NC_014410:2149886:216831921683192168858540Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,sigma 54 modulation protein/ribosomal protein S30EA6e-0649.7