Pre_GI: BLASTP Hits

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Query: NC_012917:3241196:3244755 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 3244755, End: 3247202, Length: 2448

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:1505176:1520963152096315234162454Pectobacterium wasabiae WPP163, complete genomeMscS Mechanosensitive ion channel01434
NC_013592:3212834:3213829321382932162372409Dickeya dadantii Ech586, complete genomeMscS Mechanosensitive ion channel01080
NC_010552:2331486:2331486233148623339302445Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceMscS Mechanosensitive ion channel0708
NC_012724:1781554:1802139180213918045742436Burkholderia glumae BGR1 chromosome 1, complete genomeMscS Mechanosensitive ion channel0687
NC_010515:2037825:2057870205787020603142445Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceMscS Mechanosensitive ion channel0685
NC_005773:4028500:4028500402850040309082409Pseudomonas syringae pv. phaseolicola 1448A, complete genomemechanosensitive ion channel family protein5e-143508
NC_020541:1510782:1533972153397215364462475Rhodanobacter sp. 2APBS1, complete genomesmall-conductance mechanosensitive channel6e-123442
NC_017271:4410500:4410902441090244133252424Xanthomonas campestris pv. raphani 756C chromosome, completesmall-conductance mechanosensitive channel1e-83311
NC_003902:461808:4790554790554815202466Xanthomonas campestris pv. campestris str. ATCC 33913, completehypothetical protein1e-81305
NC_007086:459934:4811584811584836232466Xanthomonas campestris pv. campestris str. 8004, complete genomehypothetical protein1e-81304
NC_010688:449649:4669694669694693592391Xanthomonas campestris pv. campestris, complete genomehypothetical protein1e-81304
NC_007508:479799:4955294955294979522424Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomesmall-conductance mechanosensitive channel1e-76288
NC_015556:515641:5295425295425329013360Pseudomonas fulva 12-X chromosome, complete genomeMscS Mechanosensitive ion channel7e-34146
NC_003911:2042389:2043404204340420458362433Silicibacter pomeroyi DSS-3, complete genomemechanosensitive ion channel family protein7e-32139
NC_011989:2262881:2262881226288122653582478Agrobacterium vitis S4 chromosome 1, complete sequencepotassium efflux system KEFA3e-31137
NC_015846:790374:791877791877792707831Capnocytophaga canimorsus Cc5 chromosome, complete genomehypothetical protein5e-31136
NC_016612:1840325:1867425186742518707513327Klebsiella oxytoca KCTC 1686 chromosome, complete genomeputative mechanosensitive channel protein3e-29130
NC_009727:357206:3691063691063712022097Coxiella burnetii Dugway 7E9-12, complete genometransporter, small conductance mechanosensitive ion channel (MscS) family protein5e-28127
NC_011528:1769349:1772850177285017749462097Coxiella burnetii CbuK_Q154, complete genomemechanosensitive ion channel6e-28126
NC_007802:1991211:1993442199344219958322391Jannaschia sp. CCS1, complete genomeMscS Mechanosensitive ion channel7e-28126
NC_008800:3330944:3368224336822433715713348Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,potassium efflux protein KefA1e-27125
NC_002971:1545924:1549514154951415516102097Coxiella burnetii RSA 493, complete genomehypothetical protein3e-27124
NC_005061:65861:7718277182804393258Candidatus Blochmannia floridanus, complete genomehypothetical protein6e-26120
NC_016632:120500:1254051254051287403336Serratia symbiotica str. 'Cinara cedri' chromosome, completeputative mechanosensitive channel4e-26120
NC_014532:1191267:1197911119791112014323522Halomonas elongata DSM 2581, complete genomeK05802 potassium efflux system protein KefA8e-26119
NC_015567:1127780:1162370116237011657563387Serratia sp. AS9 chromosome, complete genomemechanosensitive ion channel MscS1e-25119
NC_015566:1127595:1162185116218511655713387Serratia sp. AS12 chromosome, complete genomemechanosensitive ion channel MscS1e-25119
NC_009428:833701:8347408347408372892550Rhodobacter sphaeroides ATCC 17025 chromosome, complete genomemechanosensitive ion channel MscS2e-25118
NC_016614:1543333:1545084154508415476602577Vibrio sp. EJY3 chromosome 2, complete sequencepotassium efflux system kefA / Small-conductance mechanosensitive channel4e-25117
NC_004459:1:77407740102562517Vibrio vulnificus CMCP6 chromosome I, complete sequenceSmall-conductance mechanosensitive channel4e-24114
NC_007517:2926792:293255229325522933448897Geobacter metallireducens GS-15, complete genomeMscS Mechanosensitive ion channel3e-24114
NC_016513:1859767:1877463187746318807863324Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completepotassium efflux protein KefA7e-24113
NC_013416:1526920:1542313154231315456363324Aggregatibacter actinomycetemcomitans D11S-1, complete genomepotassium efflux system KefA (Protein aefA)7e-24113
NC_011884:315839:3384523384523398701419Cyanothece sp. PCC 7425, complete genomeMscS Mechanosensitive ion channel6e-23110
NC_017079:2634623:2633241263324126346261386Caldilinea aerophila DSM 14535 = NBRC 104270, complete genomemechanosensitive ion channel family protein9e-22106
NC_020409:2856481:2896725289672528990282304Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeMscS Mechanosensitive ion channel1e-20102
NC_009089:1:166121661217493882Clostridium difficile 630, complete genomeputative mechanosensitive ion channel protein2e-1792
NC_007519:3391090:3405581340558134080312451Desulfovibrio alaskensis G20 chromosome, complete genomemechanosensitive ion channel family protein6e-1790.1
NC_013316:1:163741637417255882Clostridium difficile R20291, complete genomeputative mechanosensitive ion channel protein6e-1790.1
NC_010524:3391075:3392603339260333939611359Leptothrix cholodnii SP-6, complete genomeMscS Mechanosensitive ion channel2e-1585.1
NC_008319:2471341:2481305248130524825791275Synechococcus sp. CC9311, complete genomemechanosensitive ion channel family protein1e-1482.8
NC_008319:2471341:2474774247477424761441371Synechococcus sp. CC9311, complete genomemechanosensitive ion channel family protein, putative2e-1482
NC_019940:2098902:2111003211100321125381536Thioflavicoccus mobilis 8321 chromosome, complete genomesmall-conductance mechanosensitive channel3e-1481.3
NC_014355:243543:243543243543244343801Candidatus Nitrospira defluvii, complete genomesmall-conductance mechanosensitive channel6e-1480.1
NC_014507:1373325:1374444137444413754781035Methanoplanus petrolearius DSM 11571 chromosome, complete genomemechanosensitive ion channel MscS1e-1379.3
NC_015318:1151422:1152663115266311544711809Hippea maritima DSM 10411 chromosome, complete genomemechanosensitive ion chanel protein MscS1e-1379
NC_012968:381771:3914443914443927061263Methylotenera mobilis JLW8, complete genomeMscS Mechanosensitive ion channel2e-1378.2
NC_009483:2401209:2417464241746424185431080Geobacter uraniireducens Rf4 chromosome, complete genomemechanosensitive ion channel MscS3e-1377.8
NC_007947:290864:3028243028243041311308Methylobacillus flagellatus KT, complete genomeMscS Mechanosensitive ion channel4e-1377.4
NC_007298:2947200:295468129546812955511831Dechloromonas aromatica RCB, complete genomeMscS Mechanosensitive ion channel:Conserved TM helix6e-1376.6
NC_007517:2165657:2168648216864821697301083Geobacter metallireducens GS-15, complete genomeMscS Mechanosensitive ion channel8e-1376.6
NC_017955:3006500:302331230233123024148837Modestobacter marinus, complete genomeMechanosensitive ion channel1e-1275.9
NC_015385:2505977:252451125245112525320810Treponema succinifaciens DSM 2489 chromosome, complete genomeMscS Mechanosensitive ion channel4e-1274.3
NC_015381:766355:769416769416770231816Burkholderia gladioli BSR3 chromosome 1, complete sequenceYggB1e-1172.4
NC_009482:1761529:1760240176024017615321293Synechococcus sp. RCC307 chromosome, complete genomesmall-conductance mechanosensitive channel6e-1170.1
NC_009092:1305355:132588213258821326706825Shewanella loihica PV-4, complete genomeMscS Mechanosensitive ion channel1e-1069.3
NC_012029:1525929:1550127155012715512451119Halorubrum lacusprofundi ATCC 49239 chromosome 1, complete genomeMscS Mechanosensitive ion channel1e-1069.3
NC_007005:4857768:487202348720234872853831Pseudomonas syringae pv. syringae B728a, complete genomeMscS Mechanosensitive ion channel1e-1068.9
NC_016745:2280375:2280375228037522815321158Oceanimonas sp. GK1 chromosome, complete genomemechanosensitive ion channel protein MscS3e-1068.2
NC_014471:674500:709666709666710502837Ignisphaera aggregans DSM 17230 chromosome, complete genomeMscS Mechanosensitive ion channel2e-1068.2
NC_004663:3801071:3816241381624138180911851Bacteroides thetaiotaomicron VPI-5482, complete genomeputative mechano-sensitive ion channel3e-1067.8
NC_012438:1600534:1601127160112716021431017Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomeMscS Mechanosensitive ion channel9e-1066.2
NC_020541:3655223:366851336685133669397885Rhodanobacter sp. 2APBS1, complete genomesmall-conductance mechanosensitive channel1e-0966.2
NC_016940:3600749:362449536244953625313819Saprospira grandis str. Lewin chromosome, complete genomemechanosensitive ion channel protein MscS1e-0965.9
NC_014718:232832:2328322328322353122481Burkholderia rhizoxinica HKI 454 chromosome, complete genomeMechanosensitive ion channel1e-0965.9
NC_004578:4940000:495636049563604957190831Pseudomonas syringae pv. tomato str. DC3000, complete genomemechanosensitive ion channel family protein2e-0965.5
NC_009484:1627734:1649474164947416518642391Acidiphilium cryptum JF-5 chromosome, complete genomemechanosensitive ion channel MscS3e-0964.3
NC_010816:1274702:129528512952851296082798Bifidobacterium longum DJO10A, complete genomeSmall-conductance mechanosensitive channel3e-0964.3
NC_015186:1698000:1719736171973617221262391Acidiphilium multivorum AIU301, complete genomeputative MscS family transporter4e-0964.3
NC_013171:228356:234376234376235227852Anaerococcus prevotii DSM 20548, complete genomeMscS Mechanosensitive ion channel4e-0963.9
NC_014658:701020:722479722479723243765Methanothermus fervidus DSM 2088 chromosome, complete genomemscs mechanosensitive ion channel1e-0862.8
NC_003366:255480:279879279879280694816Clostridium perfringens str. 13, complete genomehypothetical protein9e-0962.8
NC_019962:2654604:267800626780062678935930Natrinema pellirubrum DSM 15624, complete genomesmall-conductance mechanosensitive channel9e-0962.8
NC_008261:225425:249255249255250070816Clostridium perfringens ATCC 13124, complete genomemechanosensitive ion channel family protein9e-0962.8
NC_008262:227354:251679251679252494816Clostridium perfringens SM101, complete genomeMechanosensitive ion channel family2e-0862
NC_013173:1305916:1308676130867613100131338Desulfomicrobium baculatum DSM 4028, complete genomeMscS Mechanosensitive ion channel2e-0861.6
NC_019942:1211535:123989512398951240713819Aciduliprofundum sp. MAR08-339, complete genomesmall-conductance mechanosensitive channel3e-0861.2
NC_014297:1574238:1593649159364915947641116Halalkalicoccus jeotgali B3 chromosome, complete genomeMscS Mechanosensitive ion channel5e-0860.5
NC_008319:2471341:2487134248713424881531020Synechococcus sp. CC9311, complete genometransporter, small conductance mechanosensitive ion channel (MscS) family protein5e-0860.5
NC_014729:1908086:1922186192218619233431158Halogeometricum borinquense DSM 11551 chromosome, complete genomesmall-conductance mechanosensitive channel7e-0860.1
NC_019977:1245894:127194712719471272774828Methanomethylovorans hollandica DSM 15978, complete genomesmall-conductance mechanosensitive channel7e-0860.1
NC_008554:4839116:4858787485878748598751089Syntrophobacter fumaroxidans MPOB, complete genomeMscS Mechanosensitive ion channel1e-0759.3
NC_007951:570500:597074597074597886813Burkholderia xenovorans LB400 chromosome 1, complete sequenceSmall Conductance Mechanosensitive Ion Channel, (MscS) Family1e-0758.9
NC_007498:357484:385326385326386180855Pelobacter carbinolicus DSM 2380, complete genomesmall-conductance mechanosensitive channel1e-0758.9
NC_014933:1081844:1084204108420410860121809Bacteroides helcogenes P 36-108 chromosome, complete genomeMscS Mechanosensitive ion channel2e-0758.9
NC_010084:2822295:285397928539792854791813Burkholderia multivorans ATCC 17616 chromosome 1, completeMscS mechanosensitive ion channel2e-0758.5
NC_019974:2960872:2984090298409029852321143Natronococcus occultus SP4, complete genomesmall-conductance mechanosensitive channel3e-0758.2
NC_019792:3735654:3757245375724537582791035Natronobacterium gregoryi SP2 chromosome, complete genomesmall-conductance mechanosensitive channel3e-0757.8
NC_010410:3166279:318556231855623186479918Acinetobacter baumannii AYE, complete genomehypothetical protein3e-0757.8
NC_009328:3504454:353839435383943539305912Geobacillus thermodenitrificans NG80-2 chromosome, complete genomemechanosensitive ion channel protein MscS3e-0757.8
NC_004722:5381208:540071454007145401595882Bacillus cereus ATCC 14579, complete genomeMechanosensitive ion channel5e-0757
NC_017200:5325977:534453153445315345412882Bacillus thuringiensis serovar finitimus YBT-020 chromosome,mechanosensitive ion channel family protein6e-0757
NC_009430:16500:1877918779211572379Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, completehypothetical protein7e-0756.6
NC_009654:4253431:425706542570654257895831Marinomonas sp. MWYL1, complete genomeMscS mechanosensitive ion channel8e-0756.2
NC_008258:1873805:1877463187746318784941032Shigella flexneri 5 str. 8401, complete genomehypothetical protein9e-0756.2
NC_018868:3036205:303852230385223039337816Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeMscS mechanosensitive ion channel1e-0655.8
NC_011658:5239509:525807152580715258952882Bacillus cereus AH187 chromosome, complete genomemechanosensitive ion channel family protein1e-0655.8
NC_016771:5191937:521049852104985211379882Bacillus cereus NC7401, complete genomemechanosensitive ion channel family protein1e-0655.8
NC_018664:3009166:300916630091663010020855Clostridium acidurici 9a chromosome, complete genomemechanosensitive ion channel2e-0655.5
NC_006274:5267585:528995552899555290836882Bacillus cereus E33L, complete genomemechanosensitive ion channel family protein1e-0655.5
NC_005945:5202176:521770452177045218585882Bacillus anthracis str. Sterne, complete genomemechanosensitive ion channel family protein1e-0655.5
NC_007530:5197854:521645952164595217340882Bacillus anthracis str. 'Ames Ancestor', complete genomemechanosensitive ion channel family protein1e-0655.5
NC_003997:5200805:521633352163335217214882Bacillus anthracis str. Ames, complete genomemechanosensitive ion channel family protein1e-0655.5
NC_011000:3514338:355662235566223557434813Burkholderia cenocepacia J2315 chromosome 1, complete sequencemechanosensitive ion channel protein1e-0655.5
NC_012659:5200831:521635952163595217240882Bacillus anthracis str. A0248, complete genomemechanosensitive ion channel family protein1e-0655.5
NC_016779:5189139:521194652119465212827882Bacillus cereus F837/76 chromosome, complete genomePotassium efflux system KefA protein / Small- conductance mechanosensitive channel1e-0655.5
NC_009482:2109270:2109270210927021103521083Synechococcus sp. RCC307 chromosome, complete genomesmall-conductance mechanosensitive channel protein4e-0654.3
NC_015690:8645500:865033086503308651262933Paenibacillus mucilaginosus KNP414 chromosome, complete genomemechanosensitive ion channel family protein4e-0654.3
NC_016935:8716704:872555987255598726491933Paenibacillus mucilaginosus 3016 chromosome, complete genomemechanosensitive ion channel family protein4e-0654.3
NC_015425:2690448:2720030272003027211721143Clostridium botulinum BKT015925 chromosome, complete genomemechanosensitive channel protein4e-0654.3
NC_017192:497950:510259510259511119861Arcobacter sp. L, complete genomemechanosensitive ion channel3e-0654.3
NC_012668:83641:108699108699109562864Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein6e-0653.5
NC_008060:306170:311458311458312270813Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceMscS Mechanosensitive ion channel6e-0653.5
NC_008542:855347:860633860633861445813Burkholderia cenocepacia HI2424 chromosome 1, complete sequenceMscS Mechanosensitive ion channel6e-0653.5
NC_010508:809974:813030813030813842813Burkholderia cenocepacia MC0-3 chromosome 1, complete sequenceMscS Mechanosensitive ion channel6e-0653.5
NC_007510:759905:762827762827763639813Burkholderia sp. 383 chromosome 1, complete sequenceMscS Mechanosensitive ion channel9e-0653.1
NC_015318:290849:3066733066733077671095Hippea maritima DSM 10411 chromosome, complete genomemechanosensitive ion chanel protein MscS1e-0552.8