Pre_GI: BLASTP Hits

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Query: NC_012917:2971702:2991135 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 2991135, End: 2991737, Length: 603

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012779:2127542:215128121512812151874594Edwardsiella ictaluri 93-146, complete genomehypothetical protein3e-32138
NC_002927:3827211:385948938594893860100612Bordetella bronchiseptica RB50, complete genomehypothetical protein5e-1684.3
NC_011750:2009889:201094720109472011933987Escherichia coli IAI39 chromosome, complete genomehypothetical protein7e-0753.9