Pre_GI: BLASTP Hits

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Query: NC_012917:2921932:2925121 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 2925121, End: 2925759, Length: 639

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:3117639:312485131248513125489639Pectobacterium wasabiae WPP163, complete genomeRibose/galactose isomerase8e-120429
NC_004547:1970686:198944019894401990078639Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein8e-120429
NC_013592:1730505:175465617546561755294639Dickeya dadantii Ech586, complete genomeRibose/galactose isomerase2e-113407
NC_012912:1788308:181736218173621818000639Dickeya zeae Ech1591, complete genomeRibose/galactose isomerase1e-108392
NC_014500:3023762:303036030303603030998639Dickeya dadantii 3937 chromosome, complete genomeGalactose-6-phosphate isomerase LacB subunit4e-106383
NC_010001:615427:622395622395623030636Clostridium phytofermentans ISDg, complete genomeRibose/galactose isomerase1e-88325
NC_009442:1158268:117012811701281170769642Streptococcus suis 05ZYH33 chromosome, complete genomehypothetical protein2e-80298
NC_004431:279868:289106289106289744639Escherichia coli CFT073, complete genomehypothetical protein1e-60232
NC_004460:973738:985323985323985958636Vibrio vulnificus CMCP6 chromosome II, complete sequencehypothetical protein2e-60231
NC_009655:1626466:163661316366131637254642Actinobacillus succinogenes 130Z chromosome, complete genomehypothetical protein2e-59228
NC_010634:2252329:225742722574272258065639Yersinia pseudotuberculosis PB1/+, complete genomeribose/galactose isomerase5e-59227
NC_008150:1543635:154873315487331549371639Yersinia pestis Antiqua, complete genomeputative sugar-phosphate isomerase5e-59227
NC_003143:2258636:226373422637342264372639Yersinia pestis CO92, complete genomehypothetical protein5e-59227
NC_005810:2043730:204882920488292049467639Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein5e-59227
NC_010465:2428620:244005424400542440692639Yersinia pseudotuberculosis YPIII, complete genomeRibose/galactose isomerase5e-59227
NC_006155:2334122:233922023392202339858639Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein5e-59227
NC_004088:2541033:255247925524792553117639Yersinia pestis KIM, complete genomehypothetical protein5e-59227
NC_008149:1669921:167501916750191675657639Yersinia pestis Nepal516, complete genomesugar-phosphate isomerase5e-59227
NC_009381:1258396:126907312690731269711639Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein5e-59227
NC_009708:2392640:240408724040872404725639Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein5e-59227
NC_014029:2335021:234646723464672347105639Yersinia pestis Z176003 chromosome, complete genomehypothetical protein5e-59227
NC_017265:2263347:227343722734372274075639Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative sugar-phosphate isomerase5e-59227
NC_005139:518760:530553530553531194642Vibrio vulnificus YJ016 chromosome I, complete sequencehypothetical protein2e-54211
NC_017154:2258228:226332622633262263736411Yersinia pestis D106004 chromosome, complete genomesugar-phosphate isomerase2e-37155