Pre_GI: BLASTP Hits

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Query: NC_012917:2362725:2384205 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 2384205, End: 2385104, Length: 900

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009075:15017:431024310243995894Burkholderia pseudomallei 668 chromosome II, complete sequenceTranscriptional regulator1e-68259
NC_003902:3514000:351545935154593516376918Xanthomonas campestris pv. campestris str. ATCC 33913, completechromosome replication initiation inhibitor protein4e-63241
NC_010943:1426885:145597214559721456868897Stenotrophomonas maltophilia K279a, complete genomeputative LysR family TRANSCRIPTIONAL REGULATORY PROTEIN3e-62238
NC_015947:1290614:131205113120511312944894Burkholderia sp. JV3 chromosome, complete genomeLysR family transcriptional regulator ArgP1e-61236
NC_009937:4350132:435642343564234357316894Azorhizobium caulinodans ORS 571, complete genometranscriptional regulator1e-57223
NC_015563:4414854:443300544330054433910906Delftia sp. Cs1-4 chromosome, complete genometranscriptional regulator ArgP9e-56217
NC_009480:2580429:258042925804292581325897Clavibacter michiganensis subsp. michiganensis NCPPB 382, completeputative transcriptional regulator, LysR family7e-52204
NC_015953:2603526:260352626035262604431906Streptomyces sp. SirexAA-E chromosome, complete genomeLysR family transcriptional regulator7e-51201
NC_008740:1484531:151373115137311514603873Marinobacter aquaeolei VT8, complete genometranscriptional regulator, LysR family1e-49196
NC_012982:2415237:243643924364392437323885Hirschia baltica ATCC 49814, complete genometranscriptional regulator, ArgP, LysR family4e-47188
NC_012803:2195808:223996322399632240838876Micrococcus luteus NCTC 2665, complete genometranscriptional regulator2e-46186
NC_007951:1971584:198313919831391984071933Burkholderia xenovorans LB400 chromosome 1, complete sequenceTranscriptional regulator, LysR family9e-45180
NC_010524:1005355:100965410096541010589936Leptothrix cholodnii SP-6, complete genometranscriptional regulator, LysR family4e-42172
NC_014550:7560:177491774918633885Arthrobacter arilaitensis Re117, complete genomelysine export transcriptional regulatory protein LysG8e-42171
NC_010676:2793237:280280828028082803740933Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, LysR family3e-40166
NC_012668:83641:106939106939107835897Vibrio cholerae MJ-1236 chromosome 1, complete sequencechromosome replication initiation inhibitor protein1e-39164
NC_010524:933191:943524943524944378855Leptothrix cholodnii SP-6, complete genometranscriptional regulator, LysR family1e-38160
NC_015224:889536:902624902624903517894Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,chromosome replication initiation inhibitor protein5e-38158
NC_015136:2282488:231933023193302320274945Burkholderia sp. CCGE1001 chromosome 1, complete sequenceLysR family transcriptional regulator ArgP1e-34147
NC_015136:2282488:228305222830522283975924Burkholderia sp. CCGE1001 chromosome 1, complete sequenceLysR family transcriptional regulator ArgP3e-34145
NC_008253:334467:342718342718343605888Escherichia coli 536, complete genomeputative LysR-family transcriptional regulator6e-34144
NC_010623:72500:763497634977254906Burkholderia phymatum STM815 chromosome 2, complete sequencetranscriptional regulator, LysR family2e-32139
NC_009654:3980289:398028939802893981167879Marinomonas sp. MWYL1, complete genomeLysR family transcriptional regulator1e-31137
NC_015733:2720183:272333027233302724307978Pseudomonas putida S16 chromosome, complete genomeLysR family transcriptional regulator2e-1273.2
NC_012912:4428111:445503544550354455973939Dickeya zeae Ech1591, complete genometranscriptional regulator, LysR family4e-1272
NC_009256:1282793:130779313077931308749957Burkholderia vietnamiensis G4 chromosome 1, complete sequenceLysR family transcriptional regulator9e-1167.8
NC_010519:1764261:176500017650001765926927Haemophilus somnus 2336 chromosome, complete genomeLysR family transcriptional regulator5e-1065.5
NC_008309:1155218:116023611602361161162927Haemophilus somnus 129PT, complete genometranscriptional regulator5e-1065.5
NC_015224:279037:300333300333301286954Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,LysR family transcriptional regulator1e-0964.3
NC_007963:1370903:138380013838001384696897Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, LysR family3e-0962.4
NC_015563:313283:314588314588315505918Delftia sp. Cs1-4 chromosome, complete genomeLysR family transcriptional regulator6e-0962
NC_014966:638355:646226646226647077852Vibrio vulnificus MO6-24/O chromosome II, complete sequencetranscriptional regulator2e-0860.5
NC_005140:660305:668174668174669025852Vibrio vulnificus YJ016 chromosome II, complete sequencetranscriptional regulator2e-0860.5
NC_004460:81687:895758957590405831Vibrio vulnificus CMCP6 chromosome II, complete sequenceTranscriptional regulator2e-0860.1
NC_003047:74986:932879328794138852Sinorhizobium meliloti 1021, complete genomePUTATIVE TRANSCRIPTION REGULATOR PROTEIN2e-0859.7
NC_007519:64157:803788037881283906Desulfovibrio alaskensis G20 chromosome, complete genomeLysR family transcriptional regulator3e-0859.7
NC_008044:857759:872933872933873844912Silicibacter sp. TM1040, complete genometranscriptional regulator, LysR family4e-0859.3
NC_002678:6061448:607659160765916077493903Mesorhizobium loti MAFF303099, complete genometranscriptional regulator4e-0859.3
NC_009667:1341000:135994713599471360798852Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequenceLysR family transcriptional regulator3e-0859.3
NC_009439:3535152:354618435461843547113930Pseudomonas mendocina ymp, complete genomeLysR family transcriptional regulator5e-0858.5
NC_019940:3660754:368351836835183684384867Thioflavicoccus mobilis 8321 chromosome, complete genometranscriptional regulator6e-0858.5
NC_005810:3493607:351208835120883512969882Yersinia pestis biovar Microtus str. 91001, complete genometranscriptional regulator HdfR6e-0858.5
NC_016745:1472000:148525714852571486045789Oceanimonas sp. GK1 chromosome, complete genomeLysR family transcriptional regulator8e-0858.2
NC_015422:1:130181301813860843Alicycliphilus denitrificans K601 chromosome, complete genomeLysR family transcriptional regulator9e-0857.8
NC_009831:4539952:455655145565514557429879Shewanella sediminis HAW-EB3, complete genomeconserved hypothetical transcriptional regulator1e-0757.4
NC_020829:2022000:202767020276702028554885Pseudomonas denitrificans ATCC 13867, complete genometranscriptional regulator1e-0757.4
NC_015388:1161740:116275211627521163684933Desulfobacca acetoxidans DSM 11109 chromosome, complete genometranscriptional regulator, LysR family1e-0757
NC_016612:5231065:527991252799125280814903Klebsiella oxytoca KCTC 1686 chromosome, complete genomeLysR-family transcriptional regulator2e-0757
NC_009092:1305355:132354813235481324423876Shewanella loihica PV-4, complete genometranscriptional regulator, LysR family2e-0756.6
NC_005363:3562205:359199735919973592869873Bdellovibrio bacteriovorus HD100, complete genomeputative LysR-family transcriptional regulator3e-0756.2
NC_015185:485866:506609506609507505897Desulfurobacterium thermolithotrophum DSM 11699 chromosome,transcriptional regulator, LysR family3e-0756.2
NC_010067:1507823:150884515088451509777933Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-0756.2
NC_018681:7692560:769446976944697695374906Nocardia brasiliensis ATCC 700358 chromosome, complete genomeLysR family transcriptional regulator4e-0755.8
NC_015663:4950000:496489549648954965776882Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative DNA-binding transcriptional regulator5e-0755.5
NC_017047:2079368:208941620894162090318903Rahnella aquatilis HX2 chromosome, complete genomeLysR family transcriptional regulator4e-0755.5
NC_010506:2146444:215187221518722152747876Shewanella woodyi ATCC 51908, complete genometranscriptional regulator, LysR family4e-0755.5
NC_013173:3890370:390586339058633906753891Desulfomicrobium baculatum DSM 4028, complete genometranscriptional regulator, LysR family5e-0755.1
NC_015730:3853065:385676238567623856983222Roseobacter litoralis Och 149 chromosome, complete genomeHTH-type transcriptional regulator-like protein7e-0755.1
NC_014364:667841:669919669919670809891Spirochaeta smaragdinae DSM 11293 chromosome, complete genometranscriptional regulator, LysR family9e-0754.7
NC_007509:71954:101352101352102299948Burkholderia sp. 383 chromosome 3, complete sequencetranscriptional regulator, LysR family9e-0754.7
NC_014640:6815264:684767768476776848579903Achromobacter xylosoxidans A8 chromosome, complete genomeLysR family transcriptional regulator8e-0754.7
NC_015424:2836920:283692028369202837774855Aeromonas veronii B565 chromosome, complete genomeLysR family transcriptional regulator8e-0754.7
NC_013716:1298932:130178713017871302725939Citrobacter rodentium ICC168, complete genomeLysR-family transcriptional regulator7e-0754.7
NC_010658:3014371:302006930200693021007939Shigella boydii CDC 3083-94, complete genometranscriptional regulator TdcA1e-0654.3
NC_009648:4656187:466888646688864669719834Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genometranscriptional regulator HdfR1e-0654.3
NC_015410:2838132:284148928414892842343855Pseudomonas mendocina NK-01 chromosome, complete genomeLysR family transcriptional regulator1e-0654.3
NC_007613:2981829:298823529882352989173939Shigella boydii Sb227, complete genometranscriptional activator of tdc operon1e-0654.3
NC_009439:2337024:235478523547852355639855Pseudomonas mendocina ymp, complete genomeLysR family transcriptional regulator1e-0654.3
NC_013739:2057781:2076477207647720775081032Conexibacter woesei DSM 14684, complete genometranscriptional regulator, LysR family1e-0654.3
NC_015723:589727:595311595311596222912Cupriavidus necator N-1 chromosome 2, complete sequenceLysR family transcriptional regulator9e-0754.3
NC_008343:2050000:207432820743282075227900Granulibacter bethesdensis CGDNIH1, complete genometranscriptional regulators, LysR family9e-0754.3
NC_004337:3249791:325763332576333258571939Shigella flexneri 2a str. 301, complete genometranscriptional activator of tdc operon1e-0653.9
NC_000913:3256307:326414932641493265087939Escherichia coli K12, complete genomeDNA-binding transcriptional activator1e-0653.9
NC_002695:3994970:400575640057564006694939Escherichia coli O157:H7 str. Sakai, complete genometranscriptional activator of tdc operon1e-0653.9
NC_010498:3488513:349635534963553497293939Escherichia coli SMS-3-5, complete genometranscriptional regulator TdcA1e-0653.9
CU928145:3608917:361970336197033620641939Escherichia coli 55989 chromosome, complete genomeDNA-binding transcriptional activator1e-0653.9
AC_000091:3258377:326598232659823266920939Escherichia coli W3110 DNA, complete genomeDNA-binding transcriptional activator1e-0653.9
NC_009800:3307123:331496533149653315903939Escherichia coli HS, complete genometranscriptional regulator TdcA1e-0653.9
CP002185:3475991:348383134838313484769939Escherichia coli W, complete genomeDNA-binding transcriptional activator1e-0653.9
NC_011750:3768692:377947837794783780416939Escherichia coli IAI39 chromosome, complete genomeDNA-binding transcriptional activator TdcA1e-0653.9
NC_006841:1264555:128656712865671287454888Vibrio fischeri ES114 chromosome II, complete sequencetranscriptional regulators, LysR family1e-0653.9
NC_017256:30192:301923019231103912Buchnera aphidicola str. Ak (Acyrthosiphon kondoi) chromosome,transcriptional dual regulator1e-0653.9
NC_015942:63440:847938479385725933Acidithiobacillus ferrivorans SS3 chromosome, complete genomeLysR family transcriptional regulator1e-0653.9
NC_012721:109500:122531122531123481951Burkholderia glumae BGR1 chromosome 2, complete genomeTranscriptional regulator, LysR family protein1e-0653.9
NC_015379:4630367:464849446484944649393900Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative Transcription factor, LysR family1e-0653.9
NC_004741:3240909:324875132487513249689939Shigella flexneri 2a str. 2457T, complete genometranscriptional activator of tdc operon1e-0653.9
NC_008258:3224721:323256332325633233501939Shigella flexneri 5 str. 8401, complete genometranscriptional activator of tdc operon1e-0653.9
NC_010468:613812:623495623495624433939Escherichia coli ATCC 8739, complete genometranscriptional regulator, LysR family1e-0653.9
NC_017328:3289853:329769532976953298633939Shigella flexneri 2002017 chromosome, complete genomeHTH-type transcriptional regulator tdcA1e-0653.9
NC_016902:613462:621304621304622242939Escherichia coli KO11FL chromosome, complete genomeLysR family transcriptional regulator1e-0653.9
NC_013941:3884725:389551138955113896449939Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeDNA-binding transcriptional activator1e-0653.9
NC_012967:3191319:319916131991613200099939Escherichia coli B str. REL606 chromosome, complete genomeDNA-binding transcriptional activator TdcA1e-0653.9
NC_012947:630757:640440640440641378939Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeDNA-binding transcriptional activator TdcA1e-0653.9
NC_012759:3143455:315129731512973152235939Escherichia coli BW2952 chromosome, complete genomeDNA-binding transcriptional activator TdcA1e-0653.9
NC_011741:3344746:335258833525883353526939Escherichia coli IAI1 chromosome, complete genomeDNA-binding transcriptional activator TdcA1e-0653.9
NC_011415:3523364:353415035341503535088939Escherichia coli SE11 chromosome, complete genomeDNA-binding transcriptional activator TdcA1e-0653.9
CP002516:613462:621304621304622242939Escherichia coli KO11, complete genometranscriptional regulator, LysR family1e-0653.9
CU928160:3344746:335258833525883353526939Escherichia coli IAI1 chromosome, complete genomeDNA-binding transcriptional activator1e-0653.9
NC_010473:3354052:336189433618943362832939Escherichia coli str. K-12 substr. DH10B, complete genomeDNA-binding transcriptional activator1e-0653.9
NC_009801:3595001:360100436010043601942939Escherichia coli E24377A, complete genometranscriptional regulator TdcA1e-0653.9
NC_011748:3608917:361970336197033620641939Escherichia coli 55989, complete genomeDNA-binding transcriptional activator TdcA1e-0653.9
NC_011751:3710786:372157337215733722511939Escherichia coli UMN026 chromosome, complete genomeDNA-binding transcriptional activator TdcA1e-0653.9
NC_015379:4282815:428503442850344285888855Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative Transcription factor, LysR family2e-0653.5
NC_020911:83717:933029330294090789Octadecabacter antarcticus 307, complete genomeLysR family transcriptional regulator2e-0653.5
NC_011283:1307173:132301513230151323899885Klebsiella pneumoniae 342 chromosome, complete genomeLysR family transcriptional regulator2e-0653.5
NC_011094:1435347:147090514709051471837933Salmonella enterica subsp. enterica serovar Schwarzengrund strDNA-binding transcriptional regulator2e-0653.5
NC_003197:1471349:150699115069911507923933Salmonella typhimurium LT2, complete genomeputative transcriptional regulator2e-0653.5
NC_011080:1470794:150643115064311507363933Salmonella enterica subsp. enterica serovar Newport str. SL254,transcriptional regulator, LysR family2e-0653.5
NC_016856:1481325:151696715169671517899933Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative DNA-binding transcriptional regulator2e-0653.5
NC_016860:1469066:150467815046781505610933Salmonella enterica subsp. enterica serovar Typhimurium strputative DNA-binding transcriptional regulator2e-0653.5
NC_016863:1429516:146515814651581466090933Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative DNA-binding transcriptional regulator2e-0653.5
NC_020209:1949500:197284619728461973721876Pseudomonas poae RE*1-1-14, complete genomecat operon regulatory protein2e-0653.5
NC_011146:3304416:331932433193243320262939Geobacter bemidjiensis Bem, complete genometranscriptional regulator, LysR family2e-0653.1
NC_015711:7905360:790987079098707910784915Myxococcus fulvus HW-1 chromosome, complete genomeLysR family transcriptional regulator2e-0653.1
NC_008321:2569315:257290825729082573792885Shewanella sp. MR-4, complete genometranscriptional regulator, LysR family2e-0653.1
NC_008322:2637646:264124826412482642132885Shewanella sp. MR-7, complete genometranscriptional regulator, LysR family2e-0653.1
NC_012811:1138897:114461711446171145486870Methylobacterium extorquens AM1 megaplasmid, complete sequenceputative transcriptional regulator2e-0653.1
NC_008825:1113060:111928911192891120185897Methylibium petroleiphilum PM1, complete genometranscriptional regulator, LysR family3e-0652.8
NC_010002:4287439:431379643137964314698903Delftia acidovorans SPH-1, complete genometranscriptional regulator, LysR family3e-0652.8
NC_007963:2644930:265185826518582652814957Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, LysR family3e-0652.8
NC_014931:1044313:106457210645721065540969Variovorax paradoxus EPS chromosome, complete genometranscriptional regulator, LysR family3e-0652.8
NC_011901:342777:345910345910346800891Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeMetR family transcriptional regulator3e-0652.8
NC_013282:2026083:207551620755162076427912Cronobacter turicensis, complete genomeUncharacterized HTH-type transcriptional regulator ydhB3e-0652.8
NC_014323:5219154:522239252223925223279888Herbaspirillum seropedicae SmR1 chromosome, complete genomeMetE/MetH family transcription regulator protein3e-0652.8
NC_007952:3037590:305121430512143052128915Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, LysR family4e-0652.4
NC_008095:7563441:757489075748907575720831Myxococcus xanthus DK 1622, complete genometranscriptional regulator, LysR family4e-0652.4
NC_008740:1414926:143897314389731439833861Marinobacter aquaeolei VT8, complete genometranscriptional regulator, LysR family4e-0652.4
NC_020181:4800298:480555448055544806468915Enterobacter aerogenes EA1509E, complete genomeLysR family transcriptional regulator YnfL4e-0652.4
NC_020064:3157656:317869831786983179582885Serratia marcescens FGI94, complete genometranscriptional regulator6e-0652
NC_003295:659837:662013662013662882870Ralstonia solanacearum GMI1000, complete genomePROBABLE TRANSCRIPTION REGULATOR PROTEIN5e-0652
NC_007963:2644930:267232126723212673205885Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, LysR family5e-0652
NC_010551:1462827:147469114746911475605915Burkholderia ambifaria MC40-6 chromosome 1, complete sequencetranscriptional regulator, LysR family5e-0652
NC_009832:1664238:167195616719561672858903Serratia proteamaculans 568, complete genometranscriptional regulator, LysR family7e-0651.6
NC_002695:301939:326524326524327426903Escherichia coli O157:H7 str. Sakai, complete genomeputative transcriptional regulator7e-0651.6
NC_012811:1105395:112754111275411128443903Methylobacterium extorquens AM1 megaplasmid, complete sequenceTranscriptional regulator, LysR family7e-0651.6
NC_002655:301940:326525326525327409885Escherichia coli O157:H7 EDL933, complete genomeputative LysR-like transcriptional regulator6e-0651.6
NC_011353:305820:330404330404331288885Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeLysR substrate binding domain-containing protein6e-0651.6
NC_013008:306953:331716331716332600885Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeLysR family transcriptional regulator6e-0651.6
NC_010002:4256651:428130742813074282257951Delftia acidovorans SPH-1, complete genometranscriptional regulator, LysR family6e-0651.6
NC_017506:971482:994069994069994938870Marinobacter adhaerens HP15 chromosome, complete genomeLysR family transcriptional regulator6e-0651.6
NC_010552:2089140:210838421083842109271888Burkholderia ambifaria MC40-6 chromosome 2, complete sequencetranscriptional regulator, LysR family6e-0651.6
NC_020211:1655826:165757116575711658521951Serratia marcescens WW4, complete genometranscriptional activator of cyn operon, autorepressor9e-0651.2
NC_014733:2095996:210943821094382110352915Methylovorus sp. MP688 chromosome, complete genometranscriptional regulator, lysr family9e-0651.2