Pre_GI: BLASTP Hits

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Query: NC_012917:2362725:2383480 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 2383480, End: 2383815, Length: 336

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009380:4729340:474762947476294747955327Salinispora tropica CNB-440 chromosome, complete genomehypothetical protein7e-1475.9
NC_019892:3086493:310448731044873104951465Singulisphaera acidiphila DSM 18658 chromosome, complete genomehypothetical protein2e-1167.8
NC_010602:2244729:230254523025452302907363Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'hypothetical protein6e-0752.8
NC_010842:2250119:230793123079312308293363Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosomehypothetical protein6e-0752.8
NC_010842:2250119:227302722730272273389363Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosomehypothetical protein7e-0752.8
NC_010602:2244729:226764122676412268003363Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'hypothetical protein7e-0752.8
NC_007677:3469661:3473599347359934753231725Salinibacter ruber DSM 13855, complete genomeAmidohydrolase family protein5e-0649.7