Pre_GI: BLASTP Hits

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Query: NC_012917:2362725:2375565 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 2375565, End: 2376731, Length: 1167

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017168:3192817:3200378320037832016221245Yersinia pestis A1122 chromosome, complete genomeputative phage-related secreted protein4e-79295
NC_007946:1632025:1653886165388616551301245Escherichia coli UTI89, complete genomeputative phage-related secreted protein4e-79295
NC_009801:1678790:1701981170198117032011221Escherichia coli E24377A, complete genometype II/III secretion system protein4e-78291
NC_009074:2914053:2927309292730929284931185Burkholderia pseudomallei 668 chromosome I, complete sequenceType II secretory pathway, component PulD1e-52207
NC_009074:3791232:3807378380737838087241347Burkholderia pseudomallei 668 chromosome I, complete sequenceType II secretory pathway, component PulD1e-51203
NC_006350:3957454:3969661396966139710371377Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative bacteriophage-related lipoprotein8e-51201
NC_012724:359444:3712383712383725871350Burkholderia glumae BGR1 chromosome 1, complete genomeType II secretory pathway, component PulD8e-51201
NC_007651:3719191:3727926372792637293081383Burkholderia thailandensis E264 chromosome I, complete sequenceprobable phage-related secreted protein8e-50197
NC_007947:1556437:1567389156738915685761188Methylobacillus flagellatus KT, complete genometype II and III secretion system protein2e-41169
NC_016616:2699350:2711394271139427126051212Dechlorosoma suillum PS chromosome, complete genometype II secretory pathway, component PulD3e-31136
NC_012560:1564500:1586433158643315886912259Azotobacter vinelandii DJ, complete genomegeneral secretion pathway protein D1e-0964.7
NC_021150:1564229:1586446158644615887042259Azotobacter vinelandii CA6, complete genomegeneral secretion pathway protein D1e-0964.7
NC_015138:4584846:4596363459636345988342472Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completegeneral secretion pathway protein D1e-0861.2
NC_008752:4589119:4603617460361746061062490Acidovorax avenae subsp. citrulli AAC00-1, complete genomegeneral secretion pathway protein D3e-0860.1
NC_015563:5843703:5863155586315558656202466Delftia sp. Cs1-4 chromosome, complete genomegeneral secretion pathway protein D6e-0858.9
NC_008786:738791:7583807583807605422163Verminephrobacter eiseniae EF01-2, complete genomegeneral secretion pathway protein D1e-0655.1
NC_009831:3612206:3651949365194936540392091Shewanella sediminis HAW-EB3, complete genomeType II secretory pathway component PulD-like protein1e-0654.7
NC_010002:1447711:1452998145299814554572460Delftia acidovorans SPH-1, complete genomegeneral secretion pathway protein D2e-0653.9
NC_012988:32996:3299632996353802385Methylobacterium extorquens DM4, complete genomeGeneral secretion pathway protein D7e-0652
NC_010172:31264:3232532325347092385Methylobacterium extorquens PA1, complete genomegeneral secretion pathway protein D8e-0652