Pre_GI: BLASTP Hits

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Query: NC_012917:2362725:2373006 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 2373006, End: 2374280, Length: 1275

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:1771432:1804670180467018059351266Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein4e-142504
NC_018080:2288700:2299495229949523007541260Pseudomonas aeruginosa DK2 chromosome, complete genomecytoplasmic protein3e-88325
NC_013851:3166969:3178950317895031802091260Allochromatium vinosum DSM 180 chromosome, complete genomehypothetical protein4e-88325