Pre_GI: BLASTP Hits

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Query: NC_012917:2362725:2369272 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 2369272, End: 2370507, Length: 1236

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011653:748844:7666147666147679061293Thermosipho africanus TCF52B, complete genomemacrolide-efflux determinant3e-1376.6
NC_011830:1190502:1206839120683912080861248Desulfitobacterium hafniense DCB-2, complete genomemajor facilitator superfamily MFS_16e-1065.5
NC_015574:806762:8079678079678092231257Methanobacterium sp. SWAN-1 chromosome, complete genomemajor facilitator superfamily protein1e-0964.7
NC_009718:643200:6659996659996672821284Fervidobacterium nodosum Rt17-B1, complete genomemajor facilitator transporter1e-0964.7
NC_012483:3529895:3546790354679035481091320Acidobacterium capsulatum ATCC 51196, complete genometransporter, major facilitator family2e-0860.5
NC_013411:681907:6884026884026896731272Geobacillus sp. Y412MC61, complete genomemajor facilitator superfamily MFS_15e-0859.3
NC_014915:2900209:2914262291426229155331272Geobacillus sp. Y412MC52 chromosome, complete genomemajor facilitator superfamily MFS_15e-0859.3
NC_014614:2643203:2663816266381626650301215Clostridium sticklandii, complete genomeTetracycline resistance determinant tetV1e-0758.2
NC_008095:6559009:6565661656566165669051245Myxococcus xanthus DK 1622, complete genometransporter, major facilitator family1e-0654.7