Pre_GI: BLASTP Hits

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Query: NC_012917:2362725:2368522 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 2368522, End: 2368809, Length: 288

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020063:2230000:226881422688142269092279Enterobacteriaceae bacterium strain FGI 57, complete genomehypothetical protein6e-36149
NC_012108:1324885:133733113373311337570240Desulfobacterium autotrophicum HRM2, complete genomehypothetical protein9e-2095.5
NC_015497:3497680:350257635025763502878303Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomehypothetical protein3e-1994
NC_017270:1755552:179302717930271793242216Vibrio cholerae LMA3984-4 chromosome chromosome I, completehypothetical protein1e-1788.2
NC_012668:1688500:169040316904031690618216Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein1e-1788.2
NC_016633:289500:293010293010293270261Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomehypothetical protein6e-1786.3
NC_003910:3448983:346367834636783464007330Colwellia psychrerythraea 34H, complete genomehypothetical protein7e-1785.9
NC_004578:4708220:472516147251614725529369Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein9e-1785.5
NC_014965:1428902:155013615501361550357222Vibrio vulnificus MO6-24/O chromosome I, complete sequencehypothetical protein3e-1683.6
NC_014965:1428902:144747414474741447695222Vibrio vulnificus MO6-24/O chromosome I, complete sequencehypothetical protein3e-1683.6
NC_005139:1784000:192641419264141926635222Vibrio vulnificus YJ016 chromosome I, complete sequencehypothetical protein3e-1683.6
NC_015161:2018493:202348620234862024163678Deinococcus proteolyticus MRP chromosome, complete genomehypothetical protein1e-1478.6
NC_013166:82986:858248582486300477Kangiella koreensis DSM 16069, complete genomehypothetical protein1e-1271.6
NC_005966:1832066:184002818400281840264237Acinetobacter sp. ADP1, complete genomehypothetical protein6e-1269.3