Pre_GI: BLASTP Hits

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Query: NC_012917:2362725:2367221 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 2367221, End: 2368516, Length: 1296

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021066:1393750:1413020141302014144261407Raoultella ornithinolytica B6, complete genomeglycoside hydrolase0659
NC_020063:2230000:2269170226917022704861317Enterobacteriaceae bacterium strain FGI 57, complete genomehypothetical protein0655
NC_013716:1618249:1631067163106716324431377Citrobacter rodentium ICC168, complete genomeputative lipoprotein0636
NC_008258:1750964:1772792177279217741111320Shigella flexneri 5 str. 8401, complete genomehypothetical protein2e-180632
NC_007613:1533024:1558078155807815593971320Shigella boydii Sb227, complete genomehypothetical protein2e-180632
NC_009792:1479779:1483543148354314846401098Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-173608
NC_006155:3040769:3040769304076930420731305Yersinia pseudotuberculosis IP 32953, complete genomeputative lipoprotein1e-148526
NC_003143:2849377:2849377284937728506601284Yersinia pestis CO92, complete genomeputative lipoprotein2e-147522
NC_010159:1861465:1861465186146518627481284Yersinia pestis Angola, complete genomeputative lipoprotein2e-147522
NC_004088:1801819:1821509182150918227921284Yersinia pestis KIM, complete genomehypothetical protein2e-147522
NC_008149:2411161:2411161241116124124441284Yersinia pestis Nepal516, complete genomelipoprotein2e-147522
NC_005810:2613456:2613456261345626147391284Yersinia pestis biovar Microtus str. 91001, complete genomeputative lipoprotein2e-147522
NC_017154:3139614:3159311315931131605941284Yersinia pestis D106004 chromosome, complete genomeputative lipoprotein2e-147522
NC_017160:2740870:2758920275892027602031284Yersinia pestis D182038 chromosome, complete genomeputative lipoprotein2e-147522
NC_017168:2892000:2911776291177629130591284Yersinia pestis A1122 chromosome, complete genomeputative lipoprotein2e-147522
NC_017265:1521276:1542592154259215438751284Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative lipoprotein2e-147522
NC_010465:1724000:1744353174435317456361284Yersinia pseudotuberculosis YPIII, complete genomeprotein of unknown function DUF1872e-147522
NC_009708:1694685:1712954171295417142371284Yersinia pseudotuberculosis IP 31758 chromosome, complete genomelipoprotein2e-147522
NC_014310:811977:8319158319158332581344Ralstonia solanacearum PSI07 megaplasmid, complete sequencelipoprotein yddw9e-127453
NC_003296:941920:9556109556109569531344Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completehypothetical protein1e-126453
NC_013526:65495:7874678746803501605Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeprotein of unknown function DUF1872e-85317
NC_014210:4188448:4208888420888842105311644Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,protein of unknown function DUF1875e-73275
NC_013510:2782240:2788014278801427896121599Thermomonospora curvata DSM 43183, complete genomeprotein of unknown function DUF1871e-69263
NC_014632:11925:1444814448156621215Ilyobacter polytropus DSM 2926 chromosome, complete genomehypothetical protein4e-65248
NC_016776:3714642:3741395374139537429031509Bacteroides fragilis 638R, complete genomehypothetical protein2e-62240
NC_006347:3760447:3787198378719837887061509Bacteroides fragilis YCH46, complete genomeputative secreted protein2e-62240
NC_003228:3690596:3695904369590436974121509Bacteroides fragilis NCTC 9343, complete genomehypothetical protein5e-62238
NC_010163:171148:1751911751911769301740Acholeplasma laidlawii PG-8A chromosome, complete genomehypothetical protein2e-43177
NC_014150:3139852:3153372315337231551891818Brachyspira murdochii DSM 12563 chromosome, complete genomeprotein of unknown function DUF1875e-43175
NC_010163:171148:1711481711481738682721Acholeplasma laidlawii PG-8A chromosome, complete genomehypothetical protein2e-40166
NC_003228:3690596:3703002370300237044831482Bacteroides fragilis NCTC 9343, complete genomehypothetical protein5e-38159
NC_006347:3760447:3794257379425737957771521Bacteroides fragilis YCH46, complete genomehypothetical protein5e-38159
NC_016776:3714642:3748454374845437499741521Bacteroides fragilis 638R, complete genomehypothetical protein5e-38159
NC_014933:3688000:3692372369237236938291458Bacteroides helcogenes P 36-108 chromosome, complete genomehypothetical protein3e-38159
NC_011565:620801:6272686272686287401473Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,hypothetical protein2e-29130
NC_006087:28490:290672906729405339Leifsonia xyli subsp. xyli str. CTCB07, complete genomehypothetical protein8e-1375.5
NS_000195:219785:2796292796292810771449Candidatus Cloacamonas acidaminovoranshypothetical protein1e-0965.1
NC_015519:801929:8225588225588258453288Tepidanaerobacter sp. Re1 chromosome, complete genomehypothetical protein4e-0962.8
NC_005071:1111605:1135586113558611368181233Prochlorococcus marinus str. MIT 9313, complete genomeDUF1879e-0858.5
NC_011884:831905:8514808514808526671188Cyanothece sp. PCC 7425, complete genomeprotein of unknown function DUF1871e-0757.8