Pre_GI: BLASTP Hits

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Query: NC_012917:1840172:1884360 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 1884360, End: 1884644, Length: 285

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015566:3622385:362430436243043624588285Serratia sp. AS12 chromosome, complete genome50S ribosomal protein L259e-37152
NC_016863:2324293:232617823261782326462285Salmonella enterica subsp. enterica serovar Typhimurium str. UK-150S ribosomal protein L251e-36151
NC_011147:682897:704349704349704633285Salmonella enterica subsp. enterica serovar Paratyphi A str50S ribosomal protein L251e-36151
NC_010102:683444:719092719092719376285Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-36151
NC_006511:682863:704403704403704687285Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC50S ribosomal protein L251e-36151
NC_020064:3157656:316055131605513160835285Serratia marcescens FGI94, complete genomeribosomal protein L25 (general stress protein Ctc)7e-36149
NC_010067:660659:679844679844680128285Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein5e-36149
NC_013971:2408522:241129624112962411580285Erwinia amylovora ATCC 49946 chromosome, complete genome50S ribosomal protein L253e-33140
NC_013961:2370994:237376823737682374052285Erwinia amylovora, complete genome50S ribosomal protein L253e-33140
NC_014618:1593360:160859116085911608875285Enterobacter cloacae SCF1 chromosome, complete genome50S ribosomal protein L255e-32136
NC_016816:1545354:157642915764291576713285Pantoea ananatis LMG 5342, complete genome50S ribosomal protein L252e-31134
NC_009053:553298:556776556776557063288Actinobacillus pleuropneumoniae L20, complete genome50S ribosomal protein L254e-26116
NC_010170:4196197:422510142251014225724624Bordetella petrii, complete genome50S ribosomal protein L253e-21100
NC_017256:144854:144854144854145138285Buchnera aphidicola str. Ak (Acyrthosiphon kondoi) chromosome,50S ribosomal protein L252e-1994.7
NC_015731:3658956:366175736617573662380624Nitrosomonas sp. Is79A3 chromosome, complete genome50S ribosomal protein L252e-1994.4
NC_002927:960369:962550962550963164615Bordetella bronchiseptica RB50, complete genome50S ribosomal protein L258e-1992.4
NC_017033:678321:679438679438680076639Frateuria aurantia DSM 6220 chromosome, complete genome50S ribosomal protein L251e-1892
NC_017223:3345902:336891933689193369545627Bordetella pertussis CS chromosome, complete genome50S ribosomal protein L25/general stress protein Ctc1e-1891.7
NC_002929:3305682:332869933286993329325627Bordetella pertussis Tohama I, complete genome50S ribosomal protein L251e-1891.7
NC_010645:558974:560020560020560616597Bordetella avium 197N, complete genome50S ribosomal protein L25/general stress protein Ctc3e-1787.4
NC_010804:2960352:296317229631722963777606Burkholderia multivorans ATCC 17616 chromosome 1, completelarge subunit ribosomal protein L255e-1786.3
NC_010084:534937:560996560996561601606Burkholderia multivorans ATCC 17616 chromosome 1, complete50S ribosomal protein L25/general stress protein Ctc5e-1786.3
NC_014733:2095996:210375921037592104376618Methylovorus sp. MP688 chromosome, complete genomeribosomal 5S rRNA e-loop binding protein ctc/l25/tl51e-1684.7
NC_012969:2136243:214182921418292142446618Methylovorus glucosetrophus SIP3-4 chromosome, complete genomeribosomal 5S rRNA E-loop-binding protein Ctc/L25/TL51e-1684.7
NC_010995:764567:781312781312781923612Cellvibrio japonicus Ueda107, complete genomeribosomal protein L25, Ctc-form5e-1683.2
NC_004545:141478:142440142440142733294Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome50S ribosomal protein L252e-1580.9
NC_015572:4209000:424572442457244246338615Methylomonas methanica MC09 chromosome, complete genome50S ribosomal protein L259e-1579
NC_016893:694587:697886697886698176291Wigglesworthia glossinidia endosymbiont of Glossina morsitans50S ribosomal protein L253e-1477
NC_009434:3434381:343543034354303436047618Pseudomonas stutzeri A1501, complete genome50S ribosomal protein L25/general stress protein Ctc6e-1476.3
NC_012660:819381:832535832535833137603Pseudomonas fluorescens SBW25 chromosome, complete genome50S ribosomal protein L25/general stress protein Ctc1e-1375.5
NC_020209:47504:108771108771109382612Pseudomonas poae RE*1-1-14, complete genome50S ribosomal protein L25/general stress protein Ctc2e-1374.3
NC_004578:1190000:121776012177601218371612Pseudomonas syringae pv. tomato str. DC3000, complete genome50S ribosomal protein L253e-1373.9
NC_015733:864959:878238878238878831594Pseudomonas putida S16 chromosome, complete genome50S ribosomal protein L25/general stress protein Ctc4e-1373.2
NC_009656:5475540:547996554799655480579615Pseudomonas aeruginosa PA7 chromosome, complete genome50S ribosomal protein L25/general stress protein Ctc4e-1270.1
NC_014643:1577021:157897215789721579268297Rothia dentocariosa ATCC 17931 chromosome, complete genomeribosomal L25p family protein3e-1167.4
NC_015410:1202370:121752812175281218142615Pseudomonas mendocina NK-01 chromosome, complete genome50S ribosomal protein L25/general stress protein Ctc3e-1167.4
NC_016112:3840053:388179238817923882412621Methylomicrobium alcaliphilum chromosome, complete genome50S ribosomal protein L253e-1167
NC_009439:1174432:119176011917601192365606Pseudomonas mendocina ymp, complete genome50S ribosomal protein L25/general stress protein Ctc5e-1166.6
NC_012968:2000218:200232320023232002931609Methylotenera mobilis JLW8, complete genomeribosomal 5S rRNA E-loop binding protein Ctc/L25/TL57e-1165.9
NC_014218:1663486:166348616634861664067582Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomeribosomal 5S rRNA E-loop binding protein Ctc/L25/TL53e-1063.9
NC_009922:42696:489964899649571576Alkaliphilus oremlandii OhILAs, complete genomeribosomal 5S rRNA E-loop binding protein Ctc/L25/TL55e-1063.2
NC_007643:4294818:429481842948184295450633Rhodospirillum rubrum ATCC 11170, complete genomeRibosomal protein L252e-0961.6
NC_013715:1750403:176718117671811767840660Rothia mucilaginosa DY-18, complete genomeribosomal protein L254e-0960.1
NC_014654:2180994:220285322028532203533681Halanaerobium sp. 'sapolanicus' chromosome, complete genomeribosomal 5S rRNA E-loop binding protein Ctc/L25/TL51e-0858.9
NC_010814:2758902:278068427806842781268585Geobacter lovleyi SZ, complete genomeribosomal 5S rRNA E-loop binding protein Ctc/L25/TL51e-0858.5
NC_016114:4333390:433740443374044337991588Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeribosomal 5S rRNA E-loop binding protein Ctc/L25/TL53e-0857.4
NC_016111:2257166:226529822652982265885588Streptomyces cattleya NRRL 8057, complete genome50S ribosomal protein L253e-0857
NC_013929:6008072:601228160122816012877597Streptomyces scabiei 87.22 chromosome, complete genome50S ribosomal protein L256e-0856.2
NC_012918:1697860:172822217282221728815594Geobacter sp. M21 chromosome, complete genome50S ribosomal protein L25/general stress protein Ctc2e-0754.3
NC_009664:1195630:121492912149291215558630Kineococcus radiotolerans SRS30216, complete genomeribosomal 5S rRNA E-loop binding protein Ctc/L25/TL53e-0753.9
NC_010725:2589014:261462726146272615313687Methylobacterium populi BJ001, complete genomeribosomal 5S rRNA E-loop binding protein Ctc/L25/TL53e-0753.9
NC_015573:162000:165573165573166208636Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genome50S ribosomal protein L251e-0652
NC_019978:91483:103069103069103725657Halobacteroides halobius DSM 5150, complete genomeribosomal protein L25, Ctc-form2e-0651.6