Pre_GI: BLASTP Hits

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Query: NC_012917:1840172:1879652 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 1879652, End: 1879728, Length: 77

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016857:2325190:23284702328470232854677Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74tRNA-Pro1e-0652
NC_012125:1517925:15398721539872153994877Salmonella enterica subsp. enterica serovar Paratyphi C straintRNA-Pro1e-0652
NC_016810:2325190:23284702328470232854374Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Pro6e-0649.7
NC_016860:2323017:23262972326297232637377Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Pro1e-0652
NC_014618:1593360:16052481605248160532477Enterobacter cloacae SCF1 chromosome, complete genometRNA-Pro1e-0652
NC_016831:687549:70939170939170946474Salmonella enterica subsp. enterica serovar Gallinarum/pullorumtRNA-Pro6e-0649.7
NC_020064:3157656:31642093164209316428577Serratia marcescens FGI94, complete genometRNA-Pro8e-0648.9
NC_017046:2324554:23278342327834232791077Salmonella enterica subsp. enterica serovar Typhimurium str. 798tRNA-Pro1e-0652
NC_016832:687000:70745170745170752777Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,tRNA-Pro1e-0652
NC_012912:2800884:28041522804152280422877Dickeya zeae Ech1591, complete genometRNA-Pro1e-0652
NC_010067:660659:67633367633367640674Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completetRNA-Pro6e-0649.7
NC_016856:2379027:23823072382307238238377Salmonella enterica subsp. enterica serovar Typhimurium str. 14028StRNA-Pro1e-0652
NC_004631:685357:70749770749770757377Salmonella enterica subsp. enterica serovar Typhi Ty2, completetRNA-Pro1e-0652
NC_010102:683444:71498271498271505574Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,tRNA-Pro6e-0649.7