Pre_GI: BLASTP Hits

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Query: NC_012917:1840172:1875253 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 1875253, End: 1876137, Length: 885

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007946:4875997:488494848849484885826879Escherichia coli UTI89, complete genomehypothetical protein3e-69261
NC_008253:4817864:482544648254464826324879Escherichia coli 536, complete genomehypothetical protein1e-68259
NC_016002:1975000:200077120007712001643873Pseudogulbenkiania sp. NH8B, complete genomehypothetical protein6e-56218
NC_007951:2904644:292455729245572925426870Burkholderia xenovorans LB400 chromosome 1, complete sequencehypothetical protein1e-53210
NC_002947:4167500:421165242116524212611960Pseudomonas putida KT2440, complete genomehypothetical protein9e-51200
NC_012997:2941627:296992829699282970815888Teredinibacter turnerae T7901, complete genomehypothetical protein9e-47187
NC_013194:761166:766754766754767683930Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completehypothetical protein5e-21101
NC_013194:4964000:499087049908704991799930Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completehypothetical protein5e-21101
NC_012796:1600600:1621962162196216230141053Desulfovibrio magneticus RS-1, complete genomehypothetical protein2e-2099.4
NC_018750:5078705:508848450884845089422939Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein5e-1891.7
NC_014623:3136340:315623231562323157131900Stigmatella aurantiaca DW4/3-1 chromosome, complete genomehypothetical protein5e-1478.6
NC_015152:2549756:259662825966282597521894Spirochaeta sp. Buddy chromosome, complete genomehypothetical protein3e-1375.9
NC_011891:3369170:337905833790583379330273Anaeromyxobacter dehalogenans 2CP-1, complete genomehypothetical protein6e-1065.1
NC_017186:6395435:6442310644231064433411032Amycolatopsis mediterranei S699 chromosome, complete genomehypothetical protein2e-0860.1
NC_014318:6395392:6442266644226664432971032Amycolatopsis mediterranei U32 chromosome, complete genomehypothetical protein2e-0860.1
NC_016818:1795576:180041918004191801414996Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completerestriction endonuclease2e-0860.1
NC_016845:3448881:348481634848163485811996Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein4e-0858.9
NC_011751:2327014:232990923299092330904996Escherichia coli UMN026 chromosome, complete genomehypothetical protein4e-0858.9
NC_014666:300571:3108323108323122201389Frankia sp. EuI1c chromosome, complete genomehypothetical protein6e-0858.5
NC_012724:2682154:268779026877902688563774Burkholderia glumae BGR1 chromosome 1, complete genomehypothetical protein1e-0654.3