Pre_GI: BLASTP Hits

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Query: NC_012917:1840172:1860283 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 1860283, End: 1861080, Length: 798

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013941:3300000:332830333283033329004702Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-33143
NC_009792:3245368:327970332797033280371669Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-32140
NC_006905:4638707:465064246506424651313672Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein1e-32139
NC_011283:4438500:445797244579724458637666Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein7e-29127