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Query: NC_012917:1740542:1745991 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 1745991, End: 1746881, Length: 891

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012912:2901021:290253929025392903426888Dickeya zeae Ech1591, complete genomecytidine deaminase2e-96352
NC_013508:1262333:126423112642311265118888Edwardsiella tarda EIB202, complete genomecytidine deaminase5e-84311
NC_015424:2316228:234913023491302350014885Aeromonas veronii B565 chromosome, complete genomeCytidine deaminase5e-66251
NC_010334:2131939:213352721335272134417891Shewanella halifaxensis HAW-EB4, complete genomeCytidine deaminase3e-59228
NC_011852:1482343:149747114974711498364894Haemophilus parasuis SH0165, complete genomecytidine deaminase1e-57223
NC_007503:1383255:138913313891331389531399Carboxydothermus hydrogenoformans Z-2901, complete genomecytidine deaminase1e-0860.5