Pre_GI: BLASTP Hits

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Query: NC_012854:1:5643 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505,

Start: 5643, End: 6431, Length: 789

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host, Root nodule. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of Mediterranean origin used in farming, such as T. pratense, and is therefore one of the most important clover inoculants but is incompatible with American and African perennial clovers, such as those nodulated by the dissimilar strain WSM2304. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007514:335085:352031352031352825795Chlorobium chlorochromatii CaD3, complete genomehypothetical protein1e-74279
NC_015556:819503:828718828718829512795Pseudomonas fulva 12-X chromosome, complete genomeDomain of unknown function DUF882e-66251
NC_016147:151224:174484174484175326843Pseudoxanthomonas spadix BD-a59 chromosome, complete genomehypothetical protein2e-62239
NC_017277:1192485:121300512130051213754750Synechocystis sp. PCC 6803, complete genomehypothetical protein2e-59229
NC_017052:1192099:121324812132481213997750Synechocystis sp. PCC 6803 substr. PCC-N, complete genomehypothetical protein2e-59229
NC_017039:1192111:121326012132601214009750Synechocystis sp. PCC 6803 substr. PCC-P, complete genomehypothetical protein2e-59229
NC_000911:1191445:121418812141881214937750Synechocystis sp. PCC 6803, complete genomehypothetical protein2e-59229
NC_009615:2503465:250819525081952508917723Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein6e-59227
NC_016629:2784000:279106927910692791824756Desulfovibrio africanus str. Walvis Bay chromosome, completehypothetical protein2e-58225
NC_015422:2078618:209136720913672092086720Alicycliphilus denitrificans K601 chromosome, complete genomehypothetical protein3e-57221
NC_015580:293803:293803293803294567765Novosphingobium sp. PP1Y, complete genomehypothetical protein6e-55214
NC_015724:166246:182202182202183029828Cupriavidus necator N-1 plasmid BB2p, complete sequencehypothetical protein2e-54212
NC_014008:3296708:329950432995043300265762Coraliomargarita akajimensis DSM 45221 chromosome, complete genomeprotein of unknown function DUF886e-49194
NC_016077:998741:101725110172511018039789Acidaminococcus intestini RyC-MR95 chromosome, complete genomehypothetical protein2e-48192
NC_014935:1223817:124498212449821245746765Nitratifractor saLSUginis DSM 16511 chromosome, complete genomehypothetical protein1e-46186
NC_009092:521519:533870533870534667798Shewanella loihica PV-4, complete genomeprotein of unknown function DUF885e-46184
NC_012108:4454705:447318244731824473892711Desulfobacterium autotrophicum HRM2, complete genomehypothetical protein1e-45183
NC_011566:4709672:471090047109004711637738Shewanella piezotolerans WP3, complete genomehypothetical protein3e-44178
NC_009614:978506:994796994796995518723Bacteroides vulgatus ATCC 8482 chromosome, complete genomehypothetical protein9e-37153
NC_004663:3285526:330264733026473303348702Bacteroides thetaiotaomicron VPI-5482, complete genomehypothetical protein7e-36150
NC_009614:1999130:200409520040952004799705Bacteroides vulgatus ATCC 8482 chromosome, complete genomehypothetical protein2e-35149
NC_012039:1399699:141980814198081420497690Campylobacter lari RM2100, complete genomehypothetical protein3e-25115
NC_010655:854152:876739876739877494756Akkermansia muciniphila ATCC BAA-835, complete genomeprotein of unknown function DUF881e-23110
NC_015556:2265940:229809422980942298885792Pseudomonas fulva 12-X chromosome, complete genomeDomain of unknown function DUF889e-24110
NC_009659:1129066:113411011341101134820711Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein2e-23109
NC_010688:3030873:303843030384303039230801Xanthomonas campestris pv. campestris, complete genomehypothetical protein2e-22106
NC_016010:1169850:118478711847871185587801Xanthomonas axonopodis pv. citrumelo F1 chromosome, completehypothetical protein5e-22104
NC_009921:3551036:357040735704073570727321Frankia sp. EAN1pec, complete genome2e-21102
NC_015410:3093465:314075131407513141470720Pseudomonas mendocina NK-01 chromosome, complete genomehypothetical protein6e-1891.3
NC_013410:89811:911869118691893708Fibrobacter succinogenes subsp. succinogenes S85 chromosome,hypothetical protein6e-1168.2
NC_011884:2422000:2429974242997424318631890Cyanothece sp. PCC 7425, complete genomeprotein of unknown function DUF883e-0755.8