Pre_GI: BLASTN Hits

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Query: NC_012850:459315 Rhizobium leguminosarum bv. trifolii WSM1325, complete genome

Start: 459315, End: 483201, Length: 23887

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host, Root nodule. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of Mediterranean origin used in farming, such as T. pratense, and is therefore one of the most important clover inoculants but is incompatible with American and African perennial clovers, such as those nodulated by the dissimilar strain WSM2304. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015857:531314*53131455683525522Brucella pinnipedialis B2/94 chromosome chromosome 1, complete0880BLASTN svgBLASTP svg
NC_010169:527500*52750055287125372Brucella suis ATCC 23445 chromosome I, complete sequence0872BLASTN svgBLASTP svg
NC_004310:508483*50848353488526403Brucella suis 1330 chromosome I, complete sequence0872BLASTN svgBLASTP svg
NC_010103:507482*50748253233624855Brucella canis ATCC 23365 chromosome I, complete sequence0864BLASTN svgBLASTP svg
NC_006932:531000*53100055709926100Brucella abortus biovar 1 str. 9-941 chromosome I, complete0850BLASTN svgBLASTP svg
NC_007618:52640052640055279626397Brucella melitensis biovar Abortus 2308 chromosome I, complete0850BLASTN svgBLASTP svg
NC_010742:529500*52950055481725318Brucella abortus S19 chromosome 1, complete sequence0850BLASTN svgBLASTP svg
NC_011004:4947980*4947980497058322604Rhodopseudomonas palustris TIE-1, complete genome2e-56228BLASTN svgBLASTP svg
NC_010581:29439132943913296366019748Beijerinckia indica subsp. indica ATCC 9039, complete genome1e-36163BLASTN svgBLASTP svg
NC_009720:216589*21658924097524387Xanthobacter autotrophicus Py2, complete genome3e-34155BLASTN svgBLASTP svg
NC_004463:21581162158116223609977984Bradyrhizobium japonicum USDA 110, complete genome1e-26129BLASTN svgBLASTP svg
NC_002678:3210751*3210751323209921349Mesorhizobium loti MAFF303099, complete genome4e-24121BLASTN svgBLASTP svg
NC_019973:5899142*5899142593179432653Mesorhizobium australicum WSM2073, complete genome1e-20109BLASTN svgBLASTP svg
NC_015675:65385006538500655750519006Mesorhizobium opportunistum WSM2075 chromosome, complete genome1e-20109BLASTN svgBLASTP svg
NC_014923:59701825970182600283732656Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete1e-20109BLASTN svgBLASTP svg
NC_009720:41242554124255415127427020Xanthobacter autotrophicus Py2, complete genome5e-20107BLASTN svgBLASTP svg
NC_012808:39729833972983399542222440Methylobacterium extorquens AM1, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_012808:38977513897751392263924889Methylobacterium extorquens AM1, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_012808:37118063711806373409922294Methylobacterium extorquens AM1, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_012808:1220378*1220378126948449107Methylobacterium extorquens AM1, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_012808:1122341*1122341115920936869Methylobacterium extorquens AM1, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_012808:4137000*4137000416801731018Methylobacterium extorquens AM1, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_012808:420334*42033444610925776Methylobacterium extorquens AM1, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_012808:4235567*4235567425812622560Methylobacterium extorquens AM1, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_012808:48777034877703489559917897Methylobacterium extorquens AM1, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_012808:806432*80643283135724926Methylobacterium extorquens AM1, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_012808:92198592198594462922645Methylobacterium extorquens AM1, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_012811:11053951105395112959924205Methylobacterium extorquens AM1 megaplasmid, complete sequence2e-1695.6BLASTN svgBLASTP svg
NC_012811:41077641077643723726462Methylobacterium extorquens AM1 megaplasmid, complete sequence2e-1695.6BLASTN svgBLASTP svg
NC_007958:830000*83000086140231403Rhodopseudomonas palustris BisB5, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_007626:959684*959684100429644613Magnetospirillum magneticum AMB-1, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_013757:42176042176044439522636Geodermatophilus obscurus DSM 43160, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_011666:16019831601983162289320911Methylocella silvestris BL2, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007626:3393940*3393940344229748358Magnetospirillum magneticum AMB-1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008554:40888824088882411520026319Syntrophobacter fumaroxidans MPOB, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_011420:38946603894660391459519936Rhodospirillum centenum SW, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011059:2478075*2478075250911431040Prosthecochloris aestuarii DSM 271, complete genome3e-0661.9BLASTN svgBLASTP svg