Pre_GI: BLASTP Hits

Some Help

Query: NC_012850:4422966:4435599 Rhizobium leguminosarum bv. trifolii WSM1325, complete genome

Start: 4435599, End: 4438979, Length: 3381

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host, Root nodule. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of Mediterranean origin used in farming, such as T. pratense, and is therefore one of the most important clover inoculants but is incompatible with American and African perennial clovers, such as those nodulated by the dissimilar strain WSM2304. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010994:57362:7167371673747533081Rhizobium etli CIAT 652, complete genomehypothetical protein01545
NC_011365:1969198:1978004197800419814983495Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeSuperfamily I DNA and RNA helicase and helicase subunits-like protein5e-173609
NC_007761:57199:6896668966705161551Rhizobium etli CFN 42, complete genome3e-137490
NC_005126:5188976:5201181520118152044953315Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein5e-131469
NC_013971:3296272:3298069329806933014343366Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein7e-129462
NC_013961:441719:4698664698664732313366Erwinia amylovora, complete genomeprobable helicase senataxin7e-129462
NC_012214:474359:4864154864154897533339Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein8e-129462
NC_010125:1538335:1579832157983215824682637Gluconacetobacter diazotrophicus PAl 5, complete genomehypothetical protein3e-104380
NC_008577:1455000:1468067146806714713513285Shewanella sp. ANA-3 chromosome 1, complete sequenceDNA helicase related protein1e-73278
NC_013928:395028:3950283950283980333006Streptococcus mutans NN2025, complete genomehypothetical protein1e-68262
NC_010125:1538335:1577861157786115789521092Gluconacetobacter diazotrophicus PAl 5, complete genome8e-61236
NC_014098:2225174:2271634227163422748463213Bacillus tusciae DSM 2912 chromosome, complete genomehypothetical protein4e-60234
NC_008391:2253188:2260974226097422641443171Burkholderia cepacia AMMD chromosome 2, complete sequenceDNA helicase related protein6e-51203
NC_013131:8029621:8043811804381180472843474Catenulispora acidiphila DSM 44928, complete genomeDNA helicase related protein1e-50202
NC_013450:45782:4578245782489343153Staphylococcus aureus subsp. aureus ED98, complete genomehypothetical protein1e-48195
NC_011595:2616861:2622022262202226252583237Acinetobacter baumannii AB307-0294, complete genomehypothetical protein2e-48195
NC_003902:3666544:3710567371056737138303264Xanthomonas campestris pv. campestris str. ATCC 33913, completeDNA helicase related protein2e-46188
NC_017068:2661419:2668272266827226701911920Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative DNA helicase1e-45186
NC_017506:1222000:1235602123560212388773276Marinobacter adhaerens HP15 chromosome, complete genomehypothetical protein1e-45186
NC_016612:28451:3411034110377393630Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein8e-46186
NC_015556:2265940:2320628232062823238943267Pseudomonas fulva 12-X chromosome, complete genomeDNA helicase related protein8e-46186
NC_016609:701500:7096487096487124582811Niastella koreensis GR20-10 chromosome, complete genomehypothetical protein8e-45183
NC_010617:2626000:2637509263750926407693261Kocuria rhizophila DC2201, complete genomehypothetical protein3e-43177
NC_013895:117429:1505131505131536653153Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completehypothetical protein3e-42174
NC_007086:2887875:2934819293481929381183300Xanthomonas campestris pv. campestris str. 8004, complete genomehypothetical protein2e-40168
NC_015977:2807782:2815176281517628183823207Roseburia hominis A2-183 chromosome, complete genomeSuperfamily I DNA and RNA helicase and helicase subunits-like protein1e-38162
NC_010994:57362:688376883769217381Rhizobium etli CIAT 652, complete genomehypothetical protein4e-35150
NC_007086:3118116:3133200313320031362743075Xanthomonas campestris pv. campestris str. 8004, complete genomehypothetical protein1e-34149
NC_003902:1858349:1903554190355419066283075Xanthomonas campestris pv. campestris str. ATCC 33913, completehypothetical protein1e-34149
NC_013792:224283:2407872407872431052319Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequencehypothetical protein4e-28127
NC_007508:3865000:3882470388247038841341665Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative ATP-or GTP-binding protein1e-27126
NC_017068:2661419:2670226267022626718061581Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative DNA helicase7e-1790.5
NC_013792:224283:243090243090243782693Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequencehypothetical protein6e-1687.4
NC_012803:2454380:245863324586332459169537Micrococcus luteus NCTC 2665, complete genomehypothetical protein5e-1480.9
NC_016818:4215836:4215836421583642194473612Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completehypothetical protein5e-1170.9
NC_009142:2480608:2491194249119424949223729Saccharopolyspora erythraea NRRL 2338, complete genomehypothetical protein5e-0860.8
NC_016887:1949927:1957259195725919609063648Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein7e-0860.5