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Query: NC_012850:3454270:3472563 Rhizobium leguminosarum bv. trifolii WSM1325, complete genome

Start: 3472563, End: 3473165, Length: 603

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host, Root nodule. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of Mediterranean origin used in farming, such as T. pratense, and is therefore one of the most important clover inoculants but is incompatible with American and African perennial clovers, such as those nodulated by the dissimilar strain WSM2304. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008380:4078670:409749440974944098096603Rhizobium leguminosarum bv. viciae 3841, complete genomeputative TetR family transcriptional regulator2e-102370
NC_010994:3666651:368539136853913685993603Rhizobium etli CIAT 652, complete genomeprobable transcriptional regulator protein, TetR family4e-91333
NC_007761:3564449:358390635839063584508603Rhizobium etli CFN 42, complete genomeprobable transcriptional regulator protein, TetR family3e-88324
NC_003304:2507000:252007525200752520734660Agrobacterium tumefaciens str. C58 chromosome circular, completetranscriptional regulator, TetR family3e-43174
NC_003062:2506959:251996225199622520621660Agrobacterium tumefaciens str. C58 chromosome circular, completehypothetical protein3e-43174
NC_015183:2483653:250008725000872500746660Agrobacterium sp. H13-3 chromosome, complete genometranscriptional regulator, TetR family3e-36151
NC_011988:1036618:104120510412051041873669Agrobacterium vitis S4 chromosome 2, complete genometranscriptional regulator TetR family2e-35149
NC_015957:3067919:308703330870333087626594Streptomyces violaceusniger Tu 4113 chromosome, complete genomeregulatory protein TetR5e-0961.2
NC_011000:1262324:126468212646821265407726Burkholderia cenocepacia J2315 chromosome 1, complete sequenceTetR family regulatory protein6e-0857.4
NC_008463:4133700:414613741461374146754618Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative transcriptional regulator2e-0755.8
NC_015160:1055220:105522010552201055807588Odoribacter splanchnicus DSM 20712 chromosome, complete genometranscriptional regulator, TetR family9e-0753.5
NC_003295:3421520:346908034690803469694615Ralstonia solanacearum GMI1000, complete genomePUTATIVE TRANSCRIPTION REGULATOR PROTEIN1e-0653.1
NC_013406:5066769:508499650849965085649654Paenibacillus sp. Y412MC10 chromosome, complete genomeTetR family transcriptional regulator2e-0652
NC_010628:1734000:174749817474981748085588Nostoc punctiforme PCC 73102, complete genometranscriptional regulator, TetR family5e-0650.8
NC_014500:842493:846764846764847381618Dickeya dadantii 3937 chromosome, complete genomeTetR family transcriptional regulator6e-0650.8