Pre_GI: BLASTP Hits

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Query: NC_012850:3454270:3464345 Rhizobium leguminosarum bv. trifolii WSM1325, complete genome

Start: 3464345, End: 3464420, Length: 76

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host, Root nodule. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of Mediterranean origin used in farming, such as T. pratense, and is therefore one of the most important clover inoculants but is incompatible with American and African perennial clovers, such as those nodulated by the dissimilar strain WSM2304. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007761:3564449:357587835758783576052175Rhizobium etli CFN 42, complete genometRNA-Ala2e-0651.6
NC_007761:3962474:397283939728393973013175Rhizobium etli CFN 42, complete genometRNA-Ala2e-0651.6
NC_007761:57199:643746437464548175Rhizobium etli CFN 42, complete genometRNA-Ala2e-0651.6
NC_008380:4532969:45443564544356454443176Rhizobium leguminosarum bv. viciae 3841, complete genometRNA-Ala3e-0650.8
NC_015183:2483653:24965102496510249658576Agrobacterium sp. H13-3 chromosome, complete genometRNA-Ala3e-0650.8
NC_010994:57362:64713647136478876Rhizobium etli CIAT 652, complete genometRNA-Ala3e-0650.8
NC_015183:51500:59207592075928276Agrobacterium sp. H13-3 chromosome, complete genometRNA-Ala3e-0650.8
NC_011988:1036618:10466281046628104670376Agrobacterium vitis S4 chromosome 2, complete genometRNA-Ala3e-0650.8
NC_003063:757999:76844676844676852176Agrobacterium tumefaciens str. C58 chromosome linear, completetRNA-Ala3e-0650.8
NC_003047:2798367:28094562809456280953176Sinorhizobium meliloti 1021, complete genometRNA-Ala3e-0650.8
NC_010994:3666651:36773213677321367739676Rhizobium etli CIAT 652, complete genometRNA-Ala3e-0650.8
NC_012850:3867743:38792103879210387928576Rhizobium leguminosarum bv. trifolii WSM1325, complete genometRNA-Ala3e-0650.8
NC_003047:3202125:32123103212310321238576Sinorhizobium meliloti 1021, complete genometRNA-Ala3e-0650.8
NC_012850:4422966:44310114431011443108676Rhizobium leguminosarum bv. trifolii WSM1325, complete genometRNA-Ala3e-0650.8
NC_012587:2744731:27560082756008275608376Rhizobium sp. NGR234, complete genometRNA-Ala3e-0650.8
NC_003047:74986:83723837238379876Sinorhizobium meliloti 1021, complete genometRNA-Ala3e-0650.8
NC_003305:1297785:13062351306235130631379Agrobacterium tumefaciens str. C58 chromosome linear, completetRNA-Ala2e-0650.8
NC_003304:51048:58688586885876679Agrobacterium tumefaciens str. C58 chromosome circular, completetRNA-Ala2e-0650.8
NC_003305:1035342:10437521043752104383079Agrobacterium tumefaciens str. C58 chromosome linear, completetRNA-Ala2e-0650.8
NC_003062:2506959:25164042516404251647976Agrobacterium tumefaciens str. C58 chromosome circular, completetRNA-Ala3e-0650.8
NC_010994:4071131:40812904081290408136576Rhizobium etli CIAT 652, complete genometRNA-Ala3e-0650.8
NC_008380:58232:65632656326570776Rhizobium leguminosarum bv. viciae 3841, complete genometRNA-Ala3e-0650.8
NC_011988:924721:93303993303993311476Agrobacterium vitis S4 chromosome 2, complete genometRNA-Ala3e-0650.8
NC_003063:1019674:10309291030929103100476Agrobacterium tumefaciens str. C58 chromosome linear, completetRNA-Ala3e-0650.8
NC_012587:3613162:36228793622879362295476Rhizobium sp. NGR234, complete genometRNA-Ala3e-0650.8
NC_003062:50756:58487584875856276Agrobacterium tumefaciens str. C58 chromosome circular, completetRNA-Ala3e-0650.8
NC_008380:4078670:40892764089276408935176Rhizobium leguminosarum bv. viciae 3841, complete genometRNA-Ala3e-0650.8