Pre_GI: BLASTP Hits

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Query: NC_012850:3454270:3460633 Rhizobium leguminosarum bv. trifolii WSM1325, complete genome

Start: 3460633, End: 3460746, Length: 114

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host, Root nodule. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of Mediterranean origin used in farming, such as T. pratense, and is therefore one of the most important clover inoculants but is incompatible with American and African perennial clovers, such as those nodulated by the dissimilar strain WSM2304. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012850:4422966:443468544346854434798114Rhizobium leguminosarum bv. trifolii WSM1325, complete genome5S ribosomal RNA5e-1476.6
NC_009667:1341000:135153713515371351650114Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequence5S ribosomal RNA4e-0960.1
NC_009720:2143124:215559521555952155708114Xanthobacter autotrophicus Py2, complete genome5S ribosomal RNA9e-0752.4
NC_010994:4071131:407747740774774077595119Rhizobium etli CIAT 652, complete genome5S ribosomal RNA4e-1477
NC_009667:1076718:108931410893141089427114Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequence5S ribosomal RNA4e-0960.1
NC_009720:1006201:101915310191531019266114Xanthobacter autotrophicus Py2, complete genome5S ribosomal RNA9e-0752.4
NC_009668:1591290:159816015981601598273114Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequence5S ribosomal RNA4e-0960.1
NC_007958:396439:403348403348403467120Rhodopseudomonas palustris BisB5, complete genome5S ribosomal RNA6e-0649.7
NC_012850:3867743:387549838754983875611114Rhizobium leguminosarum bv. trifolii WSM1325, complete genome5S ribosomal RNA5e-1476.6
NC_009668:445134:462119462119462232114Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequence5S ribosomal RNA4e-0960.1
NC_007958:4541110:454701945470194547138120Rhodopseudomonas palustris BisB5, complete genome5S ribosomal RNA6e-0649.7
NC_003304:2507000:251254725125472512669123Agrobacterium tumefaciens str. C58 chromosome circular, completeSSU 5S ribosomal RNA9e-1062.4