Pre_GI: BLASTP Hits

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Query: NC_012850:3454270:3457639 Rhizobium leguminosarum bv. trifolii WSM1325, complete genome

Start: 3457639, End: 3459033, Length: 1395

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host, Root nodule. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of Mediterranean origin used in farming, such as T. pratense, and is therefore one of the most important clover inoculants but is incompatible with American and African perennial clovers, such as those nodulated by the dissimilar strain WSM2304. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010498:4967724:4969010496901049703741365Escherichia coli SMS-3-5, complete genomedihydrolipoamide dehydrogenase CglE1e-23111
NC_008596:4043213:4058087405808740594601374Mycobacterium smegmatis str. MC2 155, complete genomeFAD dependent oxidoreductase7e-28125
NC_014217:4550544:4566507456650745678741368Starkeya novella DSM 506 chromosome, complete genomeFAD dependent oxidoreductase9e-41168
NC_008578:591357:5991235991236004601338Acidothermus cellulolyticus 11B, complete genomefumarate reductase/succinate dehydrogenase flavoprotein2e-39163
NC_014655:379937:3840453840453854241380Leadbetterella byssophila DSM 17132 chromosome, complete genomefumarate reductase/succinate dehydrogenase flavoprotein domain protein2e-54213
NC_014364:3286459:3301146330114633026151470Spirochaeta smaragdinae DSM 11293 chromosome, complete genomefumarate reductase/succinate dehydrogenase flavoprotein domain protein2e-23110
NC_013406:3926531:3937362393736239387381377Paenibacillus sp. Y412MC10 chromosome, complete genomefumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein9e-41168
NC_015589:3711821:3711821371182137138782058Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeglucose-inhibited division protein A5e-1376.3
NC_015277:5211779:5217290521729052190861797Sphingobacterium sp. 21 chromosome, complete genomeglucose-inhibited division protein A8e-0858.9
NC_013740:1178370:1201573120157312028291257Acidaminococcus fermentans DSM 20731, complete genomeHI0933 family protein1e-21104
NC_015976:814922:8358218358218372901470Sphingobium sp. SYK-6, complete genomehypothetical protein8e-33142
NC_007510:913411:9235479235479251961650Burkholderia sp. 383 chromosome 1, complete sequencehypothetical protein6e-1065.9
NC_015577:2508027:2521033252103325223701338Treponema azotonutricium ZAS-9 chromosome, complete genomeinvasion protein IbeA5e-30132
NC_015577:2508027:2519660251966025209911332Treponema azotonutricium ZAS-9 chromosome, complete genomeinvasion protein IbeA5e-21102
NC_003911:1749467:1754354175435417557151362Silicibacter pomeroyi DSS-3, complete genomeinvasion protein IbeA6e-26119
NC_010498:4967724:4979543497954349809131371Escherichia coli SMS-3-5, complete genomeinvasion protein IbeA2e-21103
NC_015577:2508027:2518058251805825193981341Treponema azotonutricium ZAS-9 chromosome, complete genomeinvasion protein IbeA3e-29130
NC_013199:392450:4162814162814175581278Lactobacillus rhamnosus Lc 705, complete genomepredicted ORF2e-20100
NC_008525:606986:6069866069866092292244Pediococcus pentosaceus ATCC 25745, complete genomePyridine nucleotide-disulphide oxidoreductase2e-1067.4
NC_019970:2551607:2576469257646925783821914Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeThi4 family1e-20101
NC_015555:2259500:2302591230259123045041914Thermoanaerobacterium xylanolyticum LX-11 chromosome, completethiamine biosynthesis Thi4 protein2e-20100