Pre_GI: BLASTP Hits

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Query: NC_012850:3454270:3454270 Rhizobium leguminosarum bv. trifolii WSM1325, complete genome

Start: 3454270, End: 3455028, Length: 759

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host, Root nodule. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of Mediterranean origin used in farming, such as T. pratense, and is therefore one of the most important clover inoculants but is incompatible with American and African perennial clovers, such as those nodulated by the dissimilar strain WSM2304. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008148:583030:583030583030583788759Rubrobacter xylanophilus DSM 9941, complete genomeGntR-like protein1e-21103
NC_013526:105195:119507119507120259753Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeGntR domain protein7e-1994.4
NC_014323:4619344:464992446499244650634711Herbaspirillum seropedicae SmR1 chromosome, complete genometranscription regulator protein4e-1788.6
NC_017047:2957957:296207429620742962772699Rahnella aquatilis HX2 chromosome, complete genomeGntR family transcriptional regulator3e-1685.9
NC_015061:2927707:293182529318252932523699Rahnella sp. Y9602 chromosome, complete genomeGntR family transcriptional regulator3e-1685.9
NC_004337:3590323:387759638775963878285690Shigella flexneri 2a str. 301, complete genomeregulator protein for dgo operon3e-1685.5
NC_010498:1094000:111323411132341113923690Escherichia coli SMS-3-5, complete genomegalactonate operon transcriptional repressor3e-1685.5
NC_015145:3236445:327180532718053272530726Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genometranscriptional regulator2e-1583.2
NC_021171:2019755:202131920213192022035717Bacillus sp. 1NLA3E, complete genometranscriptional regulator5e-1581.6
NC_015556:4118304:413267941326794133422744Pseudomonas fulva 12-X chromosome, complete genomeGntR domain protein2e-1479.3
NC_013501:1337489:134428613442861345053768Rhodothermus marinus DSM 4252, complete genomeGntR domain protein3e-1375.9
NC_007644:1352794:135436113543611355110750Moorella thermoacetica ATCC 39073, complete genomeregulatory protein GntR, HTH3e-1375.5
NC_011898:1558208:156763615676361568325690Clostridium cellulolyticum H10, complete genomeGntR domain protein8e-1374.3
NC_009667:1341000:136099613609961361676681Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequenceGntR family transcriptional regulator1e-1273.9
NC_008596:4196194:420135942013594202099741Mycobacterium smegmatis str. MC2 155, complete genomeGntR-family protein transcriptional regulator1e-1273.6
NC_015856:268034:293167293167293937771Collimonas fungivorans Ter331 chromosome, complete genomeputative D-glucarate or D-galactorate regulator, GntR family2e-1273.2
NC_017033:1089579:110918911091891109923735Frateuria aurantia DSM 6220 chromosome, complete genometranscriptional regulator2e-1273.2
NC_010465:3046904:306868030686803069423744Yersinia pseudotuberculosis YPIII, complete genomeGntR domain protein4e-1272
NC_008149:3022970:304472130447213045464744Yersinia pestis Nepal516, complete genometranscriptional regulatory protein4e-1272
NC_009708:3035798:305763230576323058375744Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeuxu operon transcriptional regulator4e-1272
NC_017160:1299733:132130713213071322050744Yersinia pestis D182038 chromosome, complete genometranscriptional regulator4e-1272
NC_008148:1859888:187784118778411878557717Rubrobacter xylanophilus DSM 9941, complete genomeGntR-like protein5e-1271.6
NC_004088:3186954:320871332087133209513801Yersinia pestis KIM, complete genomeregulator for uxu operon5e-1271.6
NC_017265:2807302:282906228290622829862801Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,DNA-binding transcriptional repressor5e-1271.6
NC_005810:1413305:143504514350451435806762Yersinia pestis biovar Microtus str. 91001, complete genomeputative transcriptional regulatory protein5e-1271.6
NC_015064:1355065:137103413710341371891858Acidobacterium sp. MP5ACTX9 chromosome, complete genomeGntR domain protein6e-1271.2
NC_008593:640000:651050651050651724675Clostridium novyi NT, complete genometranscriptional regulator, GntR family, putative7e-1270.9
NC_015656:1876627:188194718819471882705759Frankia symbiont of Datisca glomerata chromosome, complete genomeGntR domain-containing protein8e-1270.9
NC_008027:775896:799660799660800427768Pseudomonas entomophila L48, complete genometranscriptional regulator, GntR family1e-1170.5
NC_015167:313506:317055317055317759705Cellulophaga lytica DSM 7489 chromosome, complete genomeGntR domain-containing protein1e-1170.5
NC_002678:7004370:703210170321017032844744Mesorhizobium loti MAFF303099, complete genometranscriptional regulator2e-1170.1
NC_007275:1:149981499815699702Pseudomonas syringae pv. phaseolicola 1448A small plasmid, completetranscriptional regulator, GntR family2e-1169.7
NC_004129:4093610:4101896410189641035061611Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, GntR family/amidohydrolase family protein2e-1169.3
NC_010676:304405:323839323839324528690Burkholderia phytofirmans PsJN chromosome 2, complete sequenceGntR domain protein3e-1168.9
NC_007963:2777066:277978327797832780505723Chromohalobacter salexigens DSM 3043, complete genomeGntR-like protein3e-1168.9
NC_009922:315870:338735338735339421687Alkaliphilus oremlandii OhILAs, complete genometranscriptional regulator, GntR family4e-1168.6
NC_011831:1336779:134177413417741342454681Chloroflexus aggregans DSM 9485, complete genomeregulatory protein GntR HTH6e-1168.2
NC_012560:2315350:231535023153502316072723Azotobacter vinelandii DJ, complete genometranscriptional regulator, GntR6e-1168.2
NC_021150:2315362:231536223153622316084723Azotobacter vinelandii CA6, complete genometranscriptional regulator, GntR6e-1168.2
NC_015761:1488807:149410414941041494778675Salmonella bongori NCTC 12419, complete genomeregulatory protein5e-1168.2
NC_013131:9711508:973378897337889734621834Catenulispora acidiphila DSM 44928, complete genomeregulatory protein GntR HTH5e-1168.2
NC_008699:2260606:228173422817342282474741Nocardioides sp. JS614, complete genomeGntR domain protein6e-1167.8
NC_011751:3453683:349481534948153495549735Escherichia coli UMN026 chromosome, complete genometranscriptional regulator6e-1167.8
NC_008268:4669530:469303346930334693788756Rhodococcus sp. RHA1, complete genometranscriptional regulator, GntR family9e-1167.4
NC_004193:375416:394239394239394949711Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator8e-1167.4
NC_011745:4862218:487607548760754876809735Escherichia coli ED1a chromosome, complete genomeTranscriptional regulator1e-1067
NC_013173:2261396:226881722688172269518702Desulfomicrobium baculatum DSM 4028, complete genomeGntR domain protein2e-1066.2
NC_007606:3755155:377484737748473775623777Shigella dysenteriae Sd197, complete genometranscriptional regulator2e-1066.2
NC_012912:844339:850632850632851399768Dickeya zeae Ech1591, complete genomeGntR domain protein3e-1065.9
NC_014306:2518996:252033425203342521041708Erwinia billingiae Eb661, complete genomeTranscriptional regulator, GntR family3e-1065.9
NC_015177:915366:934323934323934973651Pedobacter saltans DSM 12145 chromosome, complete genometranscriptional regulator, GntR family2e-1065.9
NC_012880:1091486:111621711162171116951735Dickeya dadantii Ech703, complete genomeGntR domain protein3e-1065.5
NC_008541:2119883:213794521379452138670726Arthrobacter sp. FB24 chromosome 1, complete sequenceGntR domain protein5e-1065.1
NC_012759:3648500:366540336654033666179777Escherichia coli BW2952 chromosome, complete genomeDNA-binding transcriptional repressor LldR5e-1065.1
NC_004337:3590323:375165237516523752428777Shigella flexneri 2a str. 301, complete genometranscriptional regulator5e-1065.1
NC_010676:2720068:273288227328822733655774Burkholderia phytofirmans PsJN chromosome 2, complete sequenceGntR domain protein6e-1064.7
NC_016612:178864:186603186603187319717Klebsiella oxytoca KCTC 1686 chromosome, complete genomeGntR family transcriptional regulator8e-1064.3
NC_003305:1743939:177186217718621772575714Agrobacterium tumefaciens str. C58 chromosome linear, completetranscriptional regulator, GntR family1e-0963.9
NC_011832:913994:952978952978953670693Candidatus Methanosphaerula palustris E1-9c, complete genomeGntR domain protein1e-0963.9
NC_016860:1614280:161428016142801614951672Salmonella enterica subsp. enterica serovar Typhimurium strputative regulatory protein1e-0963.5
NC_016856:1621279:162656716265671627238672Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative regulatory protein1e-0963.5
NC_011094:1584038:158403815840381584709672Salmonella enterica subsp. enterica serovar Schwarzengrund strregulatory protein1e-0963.5
NC_010676:897801:899693899693900427735Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, GntR family1e-0963.5
NC_007912:1231436:123868412386841239451768Saccharophagus degradans 2-40, complete genome1,4-alpha-glucan branching enzyme1e-0963.5
NC_011740:2737467:274186427418642742535672Escherichia fergusonii ATCC 35469, complete genomeputative gntR family regulatory protein2e-0963.2
NC_009381:2731965:275373427537342754414681Yersinia pestis Pestoides F chromosome, complete genometranscriptional regulatory protein2e-0963.2
NC_008786:3045770:3061342306134230624811140Verminephrobacter eiseniae EF01-2, complete genomeGntR domain protein2e-0963.2
NC_003198:1463253:147775414777541478545792Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative regulatory protein2e-0963.2
NC_003197:1611302:161647016164701617261792Salmonella typhimurium LT2, complete genomeputative regulatory protein2e-0963.2
NC_007802:3575739:361456536145653615329765Jannaschia sp. CCS1, complete genomeGntR-like2e-0963.2
NC_006510:2044347:206127920612792062007729Geobacillus kaustophilus HTA426, complete genometranscriptional regulator2e-0963.2
NC_014831:2082304:210025021002502100963714Thermaerobacter marianensis DSM 12885 chromosome, complete genometranscriptional regulator, GntR family4e-0962
NC_012590:637651:662143662143662859717Corynebacterium aurimucosum ATCC 700975, complete genometranscriptional regulator, ExuR family5e-0961.6
NC_017095:119361:147716147716148471756Fervidobacterium pennivorans DSM 9078 chromosome, complete genometranscriptional regulator5e-0961.6
NC_009665:4675289:468162246816224682374753Shewanella baltica OS185 chromosome, complete genometranscriptional regulator PdhR1e-0860.5
NC_011663:4579777:458252545825254583277753Shewanella baltica OS223 chromosome, complete genometranscriptional regulator PdhR1e-0860.5
NC_014364:2751662:275653427565342757214681Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeGntR domain protein1e-0860.5
NC_015656:454500:467927467927468721795Frankia symbiont of Datisca glomerata chromosome, complete genomeregulatory protein GntR1e-0860.5
NC_007952:1293024:129591312959131296710798Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, GntR family1e-0860.5
NC_011274:1544653:157101315710131571732720Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91GntR family regulatory protein1e-0860.1
NC_015733:3595882:361682836168283617592765Pseudomonas putida S16 chromosome, complete genomeDNA-binding transcriptional regulator GlcC2e-0860.1
NC_016604:3137694:313854031385403139238699Mycobacterium rhodesiae NBB3 chromosome, complete genometranscriptional regulator2e-0859.7
NC_008321:458811:474586474586475338753Shewanella sp. MR-4, complete genomeregulatory protein GntR, HTH2e-0859.7
NC_015761:4355335:437435443743544375127774Salmonella bongori NCTC 12419, complete genomeuxu operon transcriptional regulator2e-0859.3
NC_010125:1011430:101791310179131018671759Gluconacetobacter diazotrophicus PAl 5, complete genomeputative transcriptional regulator protein, GntR family2e-0859.3
NC_010337:2339056:234209423420942342804711Heliobacterium modesticaldum Ice1, complete genometranscriptional regulator, GntR family3e-0859.3
NC_013740:1218429:123236812323681233063696Acidaminococcus fermentans DSM 20731, complete genomeGntR domain protein3e-0858.9
NC_014394:93344:110272110272110943672Gallionella capsiferriformans ES-2 chromosome, complete genometranscriptional regulator, GntR family3e-0858.9
NC_016048:3667890:367938436793843680112729Oscillibacter valericigenes Sjm18-20, complete genomeputative GntR family transcriptional regulator4e-0858.5
NC_013173:2261396:227212122721212272783663Desulfomicrobium baculatum DSM 4028, complete genometranscriptional regulator, GntR family5e-0858.5
NC_014011:527681:541220541220541882663Aminobacterium colombiense DSM 12261 chromosome, complete genometranscriptional regulator, GntR family5e-0858.2
NC_019940:2931500:295856629585662959279714Thioflavicoccus mobilis 8321 chromosome, complete genometranscriptional regulator5e-0858.2
NC_006905:4638707:466873046687304669503774Salmonella enterica subsp. enterica serovar Choleraesuis strtranscriptional repressor for uxu operon5e-0858.2
NC_004631:4687270:470799047079904708763774Salmonella enterica subsp. enterica serovar Typhi Ty2, completeuxu operon transcriptional regulator8e-0857.8
NC_011147:4460726:449757144975714498344774Salmonella enterica subsp. enterica serovar Paratyphi A strDNA-binding transcriptional repressor UxuR8e-0857.8
NC_004193:2921103:292578529257852926489705Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator7e-0857.8
NC_009142:5647737:565529756552975655986690Saccharopolyspora erythraea NRRL 2338, complete genomepossible transcriptional regulator, GntR family7e-0857.8
NC_011365:1865687:188920618892061889964759Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeGntR family transcriptional regulator8e-0857.4
NC_016023:755237:755237755237755947711Bacillus coagulans 36D1 chromosome, complete genomeGntR domain-containing protein9e-0857.4
NC_010102:4745949:476664047666404767365726Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-0757
NC_017195:517344:536111536111536803693Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completetranscriptional regulator, GntR family1e-0757
NC_016147:2964178:297771029777102978438729Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeGntR family transcriptional regulator1e-0757
NC_014666:4043279:404875440487544049623870Frankia sp. EuI1c chromosome, complete genomeregulatory protein GntR HTH1e-0757
NC_012125:4716000:474604547460454746818774Salmonella enterica subsp. enterica serovar Paratyphi C strainDNA-binding transcriptional repressor UxuR1e-0757
NC_013716:4824541:484752448475244848306783Citrobacter rodentium ICC168, complete genomeGntR-family transcriptional regulator2e-0756.6
NC_012856:1:147231472315487765Ralstonia pickettii 12D chromosome 1, complete genomeGntR domain protein2e-0756.6
NC_013172:953772:956773956773957486714Brachybacterium faecium DSM 4810, complete genometranscriptional regulator2e-0756.6
NC_019673:7797666:780755578075557808226672Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, GntR family2e-0756.2
NC_016935:4435759:444325444432544444000747Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein3e-0755.8
NC_017328:3088907:315387331538733154643771Shigella flexneri 2002017 chromosome, complete genomeTranscriptional activator for glc operon3e-0755.8
NC_016582:11820671:118416551184165511842452798Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator3e-0755.8
NC_018691:2810949:281205628120562812796741Alcanivorax dieselolei B5 chromosome, complete genomeGntR family transcriptional regulator3e-0755.5
NC_013530:423540:442371442371443075705Xylanimonas cellulosilytica DSM 15894, complete genomeGntR domain protein4e-0755.1
NC_010175:3712456:372623837262383726933696Chloroflexus aurantiacus J-10-fl, complete genomeGntR domain protein4e-0755.1
NC_010694:891967:909868909868910632765Erwinia tasmaniensis, complete genomePyruvate dehydrogenase complex repressor5e-0754.7
NC_012214:897206:915170915170915934765Erwinia pyrifoliae Ep1/96, complete genomePyruvate dehydrogenase complex repressor8e-0754.3
NC_008596:4104476:411410641141064114864759Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, GntR family protein9e-0754.3
NC_007613:4403070:442852244285224429295774Shigella boydii Sb227, complete genomeregulator for uxu operon1e-0653.9
NC_011745:5114500:513677251367725137545774Escherichia coli ED1a chromosome, complete genomeDNA-binding transcriptional repressor UxuR1e-0653.9
NC_009007:57804:634406344064171732Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequencetranscriptional regulator, GntR family1e-0653.9
NC_007974:2097334:213197321319732132776804Ralstonia metallidurans CH34 chromosome 2, complete sequenceregulatory protein GntR, HTH1e-0653.9
NC_013971:817284:839648839648840412765Erwinia amylovora ATCC 49946 chromosome, complete genomepyruvate dehydrogenase complex repressor9e-0753.9
NC_008253:4817864:485861648586164859389774Escherichia coli 536, complete genomeuxu operon transcriptional regulator1e-0653.5
NC_021171:4549673:455230045523004552956657Bacillus sp. 1NLA3E, complete genomeGntR family transcriptional regulator1e-0653.5
NC_014532:349384:349384349384350133750Halomonas elongata DSM 2581, complete genometranscriptional regulator, GntR family1e-0653.5
CP002185:4791811:481706548170654817790726Escherichia coli W, complete genomeDNA-binding transcriptional repressor1e-0653.5
NC_015145:3657103:367579336757933676560768Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genometranscriptional regulator1e-0653.5
NC_014364:394899:444926444926445663738Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeGntR domain protein2e-0653.1
NC_015172:1471501:147493214749321475636705Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeregulatory protein GntR HTH2e-0653.1
NC_018524:4564493:457843645784364579053618Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomebacterial regulatory s, gntR family protein2e-0653.1
NC_014364:394899:435427435427436113687Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeGntR domain protein2e-0653.1
NC_015138:272500:290965290965291732768Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeGntR domain-containing protein2e-0652.8
NC_014966:1668822:169026116902611691052792Vibrio vulnificus MO6-24/O chromosome II, complete sequencetranscriptional regulator2e-0652.8
NC_020210:661236:668499668499669158660Geobacillus sp. GHH01, complete genomeHTH-type transcriptional regulator2e-0652.8
NC_016593:762216:786841786841787500660Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completetranscriptional regulator, GntR3e-0652.4
NC_015434:3581001:358911635891163589820705Verrucosispora maris AB-18-032 chromosome, complete genomeGntR family transcriptional regulator3e-0652.4
NC_015733:3736104:378283237828323783611780Pseudomonas putida S16 chromosome, complete genomeDNA-binding transcriptional regulator GlcC3e-0652
NC_011959:131800:135215135215135898684Thermomicrobium roseum DSM 5159, complete genomeGntR-family transcriptional regulator4e-0652
NC_014532:2989185:299424429942442994999756Halomonas elongata DSM 2581, complete genomeGntR domain protein4e-0652
NC_016612:361417:361417361417362190774Klebsiella oxytoca KCTC 1686 chromosome, complete genomeGntR family transcriptional regulator protein5e-0651.6
NC_007946:4875997:491812649181264918899774Escherichia coli UTI89, complete genomeUxuR uxu operon transcriptional regulator5e-0651.6
NC_014210:144036:153050153050153823774Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, GntR family5e-0651.6
NC_014550:2562053:256446125644612565135675Arthrobacter arilaitensis Re117, complete genomeputative GntR family transcriptional regulator5e-0651.6
NC_015314:89815:101357101357102130774Pseudonocardia dioxanivorans CB1190 plasmid pPSED01, completeGntR domain-containing protein6e-0651.2
NC_014118:1528851:152885115288511529540690Burkholderia sp. CCGE1002 chromosome chromosome 2, completeregulatory protein GntR HTH6e-0651.2
NC_014834:614890:633477633477634205729Rhodopseudomonas palustris DX-1 chromosome, complete genomeGntR family transcriptional regulator6e-0651.2
NC_016027:2512297:252258525225852523292708Gluconacetobacter xylinus NBRC 3288, complete genomeGntR family transcriptional regulator8e-0650.8
NC_016894:3329562:333153633315363332213678Acetobacterium woodii DSM 1030 chromosome, complete genomeGntR family transcriptional regulator8e-0650.8
NC_003305:1297785:131267613126761313407732Agrobacterium tumefaciens str. C58 chromosome linear, completetranscriptional regulator, GntR family9e-0650.8
NC_013520:1905554:191069019106901911397708Veillonella parvula DSM 2008, complete genometranscriptional regulator, GntR family9e-0650.8