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Query: NC_012848:320883 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501,

Start: 320883, End: 344259, Length: 23377

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host, Root nodule. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of Mediterranean origin used in farming, such as T. pratense, and is therefore one of the most important clover inoculants but is incompatible with American and African perennial clovers, such as those nodulated by the dissimilar strain WSM2304. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_019973:56013465601346562502823683Mesorhizobium australicum WSM2073, complete genome3e-52214BLASTN svgBLASTP svg
NC_015675:62280006228000625073922740Mesorhizobium opportunistum WSM2075 chromosome, complete genome3e-52214BLASTN svgBLASTP svg
NC_014923:56666195666619569609929481Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete3e-52214BLASTN svgBLASTP svg
NC_007492:20357612035761205955323793Pseudomonas fluorescens PfO-1, complete genome7e-44186BLASTN svgBLASTP svg
NC_021150:19652641965264198887523612Azotobacter vinelandii CA6, complete genome3e-43184BLASTN svgBLASTP svg
NC_012560:19652511965251198886223612Azotobacter vinelandii DJ, complete genome3e-43184BLASTN svgBLASTP svg
NC_008702:1432952*1432952147997747026Azoarcus sp. BH72, complete genome2e-41178BLASTN svgBLASTP svg
NC_008782:11367321136732115655319822Acidovorax sp. JS42, complete genome9e-28133BLASTN svgBLASTP svg
NC_014541:21227882122788214364020853Ferrimonas balearica DSM 9799 chromosome, complete genome9e-28133BLASTN svgBLASTP svg
NC_015422:11637521163752119065526904Alicycliphilus denitrificans K601 chromosome, complete genome6e-26127BLASTN svgBLASTP svg
NC_014910:34584753458475348275724283Alicycliphilus denitrificans BC chromosome, complete genome6e-26127BLASTN svgBLASTP svg
NC_008095:68773886877388689529417907Myxococcus xanthus DK 1622, complete genome6e-26127BLASTN svgBLASTP svg
NC_004578:21859072185907220851022604Pseudomonas syringae pv. tomato str. DC3000, complete genome6e-26127BLASTN svgBLASTP svg
NC_011992:10389851038985105881219828Acidovorax ebreus TPSY, complete genome2e-25125BLASTN svgBLASTP svg
NC_020126:78964477896447792073324287Myxococcus stipitatus DSM 14675, complete genome3e-24121BLASTN svgBLASTP svg
NC_007298:77872377872382009941377Dechloromonas aromatica RCB, complete genome5e-23117BLASTN svgBLASTP svg
NC_007005:40623114062311408347221162Pseudomonas syringae pv. syringae B728a, complete genome3e-21111BLASTN svgBLASTP svg
NC_013422:20044782004478202318018703Halothiobacillus neapolitanus c2, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_005773:38514333851433386927817846Pseudomonas syringae pv. phaseolicola 1448A, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_009092:2282437*2282437232744145005Shewanella loihica PV-4, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_012850:3867743*3867743389224624504Rhizobium leguminosarum bv. trifolii WSM1325, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_019673:89541889541891638420967Saccharothrix espanaensis DSM 44229 complete genome7e-1383.8BLASTN svgBLASTP svg
NC_016048:184500*18450023109946600Oscillibacter valericigenes Sjm18-20, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_008380:4532969*4532969455742124453Rhizobium leguminosarum bv. viciae 3841, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_018750:4311300*4311300432914617847Streptomyces venezuelae ATCC 10712, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014165:25330402533040256380530766Thermobispora bispora DSM 43833 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013202:906044*90604493762031577Halomicrobium mukohataei DSM 12286, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009952:52645652645655182825373Dinoroseobacter shibae DFL 12, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007492:29940362994036302311329078Pseudomonas fluorescens PfO-1, complete genome3e-0661.9BLASTN svgBLASTP svg