Query: NC_012848:320883 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501,
Start: 320883, End: 344259, Length: 23377
Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria
General Information: Temp: Mesophile; Habitat: Host, Root nodule. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of Mediterranean origin used in farming, such as T. pratense, and is therefore one of the most important clover inoculants but is incompatible with American and African perennial clovers, such as those nodulated by the dissimilar strain WSM2304. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_019973:5601346 | 5601346 | 5625028 | 23683 | Mesorhizobium australicum WSM2073, complete genome | 3e-52 | 214 | BLASTN svg | BLASTP svg |
NC_015675:6228000 | 6228000 | 6250739 | 22740 | Mesorhizobium opportunistum WSM2075 chromosome, complete genome | 3e-52 | 214 | BLASTN svg | BLASTP svg |
NC_014923:5666619 | 5666619 | 5696099 | 29481 | Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete | 3e-52 | 214 | BLASTN svg | BLASTP svg |
NC_007492:2035761 | 2035761 | 2059553 | 23793 | Pseudomonas fluorescens PfO-1, complete genome | 7e-44 | 186 | BLASTN svg | BLASTP svg |
NC_021150:1965264 | 1965264 | 1988875 | 23612 | Azotobacter vinelandii CA6, complete genome | 3e-43 | 184 | BLASTN svg | BLASTP svg |
NC_012560:1965251 | 1965251 | 1988862 | 23612 | Azotobacter vinelandii DJ, complete genome | 3e-43 | 184 | BLASTN svg | BLASTP svg |
NC_008702:1432952* | 1432952 | 1479977 | 47026 | Azoarcus sp. BH72, complete genome | 2e-41 | 178 | BLASTN svg | BLASTP svg |
NC_008782:1136732 | 1136732 | 1156553 | 19822 | Acidovorax sp. JS42, complete genome | 9e-28 | 133 | BLASTN svg | BLASTP svg |
NC_014541:2122788 | 2122788 | 2143640 | 20853 | Ferrimonas balearica DSM 9799 chromosome, complete genome | 9e-28 | 133 | BLASTN svg | BLASTP svg |
NC_015422:1163752 | 1163752 | 1190655 | 26904 | Alicycliphilus denitrificans K601 chromosome, complete genome | 6e-26 | 127 | BLASTN svg | BLASTP svg |
NC_014910:3458475 | 3458475 | 3482757 | 24283 | Alicycliphilus denitrificans BC chromosome, complete genome | 6e-26 | 127 | BLASTN svg | BLASTP svg |
NC_008095:6877388 | 6877388 | 6895294 | 17907 | Myxococcus xanthus DK 1622, complete genome | 6e-26 | 127 | BLASTN svg | BLASTP svg |
NC_004578:2185907 | 2185907 | 2208510 | 22604 | Pseudomonas syringae pv. tomato str. DC3000, complete genome | 6e-26 | 127 | BLASTN svg | BLASTP svg |
NC_011992:1038985 | 1038985 | 1058812 | 19828 | Acidovorax ebreus TPSY, complete genome | 2e-25 | 125 | BLASTN svg | BLASTP svg |
NC_020126:7896447 | 7896447 | 7920733 | 24287 | Myxococcus stipitatus DSM 14675, complete genome | 3e-24 | 121 | BLASTN svg | BLASTP svg |
NC_007298:778723 | 778723 | 820099 | 41377 | Dechloromonas aromatica RCB, complete genome | 5e-23 | 117 | BLASTN svg | BLASTP svg |
NC_007005:4062311 | 4062311 | 4083472 | 21162 | Pseudomonas syringae pv. syringae B728a, complete genome | 3e-21 | 111 | BLASTN svg | BLASTP svg |
NC_013422:2004478 | 2004478 | 2023180 | 18703 | Halothiobacillus neapolitanus c2, complete genome | 5e-17 | 97.6 | BLASTN svg | BLASTP svg |
NC_005773:3851433 | 3851433 | 3869278 | 17846 | Pseudomonas syringae pv. phaseolicola 1448A, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_009092:2282437* | 2282437 | 2327441 | 45005 | Shewanella loihica PV-4, complete genome | 8e-16 | 93.7 | BLASTN svg | BLASTP svg |
NC_012850:3867743* | 3867743 | 3892246 | 24504 | Rhizobium leguminosarum bv. trifolii WSM1325, complete genome | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_019673:895418 | 895418 | 916384 | 20967 | Saccharothrix espanaensis DSM 44229 complete genome | 7e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_016048:184500* | 184500 | 231099 | 46600 | Oscillibacter valericigenes Sjm18-20, complete genome | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_008380:4532969* | 4532969 | 4557421 | 24453 | Rhizobium leguminosarum bv. viciae 3841, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_018750:4311300* | 4311300 | 4329146 | 17847 | Streptomyces venezuelae ATCC 10712, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_014165:2533040 | 2533040 | 2563805 | 30766 | Thermobispora bispora DSM 43833 chromosome, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_013202:906044* | 906044 | 937620 | 31577 | Halomicrobium mukohataei DSM 12286, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_009952:526456 | 526456 | 551828 | 25373 | Dinoroseobacter shibae DFL 12, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_007492:2994036 | 2994036 | 3023113 | 29078 | Pseudomonas fluorescens PfO-1, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |