Pre_GI: BLASTP Hits

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Query: NC_012808:3897751:3916796 Methylobacterium extorquens AM1, complete genome

Start: 3916796, End: 3917245, Length: 450

Host Lineage: Methylobacterium extorquens; Methylobacterium; Methylobacteriaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: First isolated in 1960 in Oxford, England, as an airborne contaminant growing on methylamine. This strain can grow on methylamine or methanol, but not methane. This organism is capable of growth on one-carbon compounds such as methanol. Methanol is oxidized to formaldehyde which is then used metabolically to generate either energy or biomass. These bacteria are commonly found in the environment, especially associated with plants which produce methanol when metabolizing pectin during cell wall synthesis. At least 25 genes are required for this complex process of converting methanol to formaldehyde and this specialized metabolic pathway is of great interest.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010725:3917369:3928206392820639294021197Methylobacterium populi BJ001, complete genomeefflux transporter, RND family, MFP subunit4e-1993.6
NC_011748:3983432:4024340402434040254971158Escherichia coli 55989, complete genomemultidrug efflux system protein MdtE2e-1787.8
AC_000091:3976888:3980026398002639811831158Escherichia coli W3110 DNA, complete genomemultidrug resistance efflux transporter2e-1787.8
CU928160:3709081:3723217372321737243741158Escherichia coli IAI1 chromosome, complete genomemultidrug resistance efflux transporter2e-1787.8
NC_007384:3741708:3744846374484637460031158Shigella sonnei Ss046, complete genomehypothetical protein2e-1787.8
NC_010473:3722571:3755000375500037561571158Escherichia coli str. K-12 substr. DH10B, complete genomemultidrug resistance efflux transporter2e-1787.8
NC_010468:231000:2342662342662354231158Escherichia coli ATCC 8739, complete genomeefflux transporter, RND family, MFP subunit2e-1787.8
NC_009800:3685651:3700543370054337017001158Escherichia coli HS, complete genomemultidrug resistance protein MdtE2e-1787.8
NC_009801:3956917:3971043397104339722001158Escherichia coli E24377A, complete genomemultidrug resistance protein MdtE2e-1787.8
NC_000913:3624826:3657255365725536584121158Escherichia coli K12, complete genomemultidrug resistance efflux transporter2e-1787.8
NC_007613:3470314:3504798350479835059551158Shigella boydii Sb227, complete genomehypothetical protein2e-1787.8
CU928145:3983432:4024340402434040254971158Escherichia coli 55989 chromosome, complete genomemultidrug resistance efflux transporter2e-1787.8
NC_013353:4313462:4326442432644243275991158Escherichia coli O103:H2 str. 12009, complete genomemultidrug resistance efflux transporter MdtE2e-1787.8
AP010958:4313462:4326442432644243275991158Escherichia coli O103:H2 str. 12009 DNA, complete genomemultidrug resistance efflux transporter MdtE2e-1787.8
CP002516:246767:2499052499052510621158Escherichia coli KO11, complete genomeefflux transporter, RND family, MFP subunit2e-1787.8
CP002185:3822470:3855011385501138561681158Escherichia coli W, complete genomemultidrug resistance efflux transporter2e-1787.8
NC_004741:4132056:413664841366484137559912Shigella flexneri 2a str. 2457T, complete genome2e-1787.8
NC_004337:3590323:363628936362893637193905Shigella flexneri 2a str. 301, complete genome2e-1787.8
NC_004337:3621985:363628936362893637193905Shigella flexneri 2a str. 301, complete genome2e-1787.8
NC_011415:3887997:3904374390437439055311158Escherichia coli SE11 chromosome, complete genomemultidrug efflux system protein MdtE2e-1787.8
NC_017328:3655876:367114536711453672062918Shigella flexneri 2002017 chromosome, complete genomeMultidrug resistance protein mdtE precursor2e-1787.8
NC_008258:3581583:359655035965503597467918Shigella flexneri 5 str. 8401, complete genome2e-1787.8
NC_016902:246767:2499052499052510621158Escherichia coli KO11FL chromosome, complete genomeRND family efflux transporter MFP subunit2e-1787.8
NC_013364:4306000:4318721431872143198781158Escherichia coli O111:H- str. 11128, complete genomemultidrug resistance efflux transporter MdtE2e-1787.8
NC_013361:4566779:4580001458000145811581158Escherichia coli O26:H11 str. 11368 chromosome, complete genomemultidrug efflux system protein MdtE2e-1787.8
NC_012967:3549880:3588723358872335898801158Escherichia coli B str. REL606 chromosome, complete genomemultidrug efflux system protein MdtE2e-1787.8
NC_012947:248000:2512962512962524531158Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completemultidrug efflux system protein MdtE2e-1787.8
NC_012759:3529657:3545749354574935469061158Escherichia coli BW2952 chromosome, complete genomemultidrug efflux system protein MdtE2e-1787.8
NC_011741:3709081:3723217372321737243741158Escherichia coli IAI1 chromosome, complete genomemultidrug efflux system protein MdtE2e-1787.8
NC_011666:1572487:1575648157564815768591212Methylocella silvestris BL2, complete genomeefflux transporter, RND family, MFP subunit1e-1685.5
NC_010658:3622610:3637035363703536381921158Shigella boydii CDC 3083-94, complete genomemultidrug resistance protein MdtE1e-1685.5
NC_016822:3946500:3963270396327039644271158Shigella sonnei 53G, complete genomemultidrug efflux system protein MdtE1e-1685.1
NC_013859:9500:1033710337115391203Azospirillum sp. B510 plasmid pAB510e, complete sequenceefflux transporter2e-1684.7
NC_007492:3332839:3332839333283933339961158Pseudomonas fluorescens PfO-1, complete genomeSecretion protein HlyD2e-1684.3
NC_011296:1542835:1549918154991815510631146Thermodesulfovibrio yellowstonii DSM 11347, complete genomeacriflavine resistance protein A5e-1683.2
NC_015567:1127780:1159892115989211610791188Serratia sp. AS9 chromosome, complete genomeRND family efflux transporter MFP subunit7e-1682.8
NC_015566:1127595:1159707115970711608941188Serratia sp. AS12 chromosome, complete genomeRND family efflux transporter MFP subunit7e-1682.8
NC_015379:2482901:2492232249223224933801149Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,acriflavine resistance protein A7e-1682.8
NC_016002:2453919:2472106247210624732901185Pseudogulbenkiania sp. NH8B, complete genomecation/multidrug efflux system, membrane-fusion protein AcrA9e-1682.4
NC_007509:71954:1050031050031062591257Burkholderia sp. 383 chromosome 3, complete sequenceSecretion protein, HlyD family1e-1582
NC_013592:1465015:1483035148303514842971263Dickeya dadantii Ech586, complete genomeefflux transporter, RND family, MFP subunit2e-1581.6
NC_017075:1674758:1698680169868016998701191Rubrivivax gelatinosus IL144, complete genomemultidrug resistance protein MexA3e-1580.5
NC_015424:3112637:3151475315147531526681194Aeromonas veronii B565 chromosome, complete genomeAcriflavin resistance protein A5e-1580.1
NC_010067:4149298:4161654416165441628111158Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein5e-1580.1
NC_010814:3673983:3693290369329036944891200Geobacter lovleyi SZ, complete genomeefflux transporter, RND family, MFP subunit5e-1579.7
NC_006511:3364448:3367626336762633687831158Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCtransmembrane protein affecting septum formation and cell membrane permeability6e-1579.7
NC_008570:3220539:3273334327333432745271194Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeacriflavin resistance protein A7e-1579.3
NC_010002:528529:5317005317005329921293Delftia acidovorans SPH-1, complete genomeefflux transporter, RND family, MFP subunit7e-1579.3
NC_012808:2886282:2891351289135128925201170Methylobacterium extorquens AM1, complete genomemultidrug efflux system9e-1579
NC_007508:2756945:2759759275975927608711113Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomemembrane fusion protein1e-1479
NC_009512:3251545:3254778325477832559831206Pseudomonas putida F1, complete genomeefflux transporter, RND family, MFP subunit2e-1478.2
NC_008752:415599:4187824187824200861305Acidovorax avenae subsp. citrulli AAC00-1, complete genomeefflux transporter, RND family, MFP subunit2e-1477.8
NC_018691:1293449:1308298130829813094581161Alcanivorax dieselolei B5 chromosome, complete genomeMultidrug efflux system transport protein1e-1375.1
NC_013592:3212834:3237427323742732385961170Dickeya dadantii Ech586, complete genomeefflux transporter, RND family, MFP subunit4e-1373.6
NC_007492:3180480:3183639318363931847961158Pseudomonas fluorescens PfO-1, complete genomeSecretion protein HlyD5e-1373.2
NC_013456:2528284:2528284252828425294231140Vibrio sp. Ex25 chromosome 1, complete genomemembrane fusion protein of RND family multidrug efflux pump5e-1373.2
NC_014910:465980:4706244706244719041281Alicycliphilus denitrificans BC chromosome, complete genomeefflux transporter, rnd family, mfp subunit3e-1270.9
NC_004547:3866439:3869665386966538708371173Erwinia carotovora subsp. atroseptica SCRI1043, complete genomemultidrug resistance protein3e-1270.5
NC_011894:3090000:3101741310174131028951155Methylobacterium nodulans ORS 2060, complete genomeefflux transporter, RND family, MFP subunit4e-1270.5
NC_009654:1123709:1129680112968011308341155Marinomonas sp. MWYL1, complete genomeRND family efflux transporter MFP subunit5e-1270.1
NC_014758:579741:5960655960655972911227Calditerrivibrio nitroreducens DSM 19672 chromosome, completeefflux transporter, rnd family, mfp subunit1e-1168.9
NC_007005:3414579:3440050344005034412521203Pseudomonas syringae pv. syringae B728a, complete genomeSecretion protein HlyD2e-1168.2
NC_014931:1642179:1666374166637416676001227Variovorax paradoxus EPS chromosome, complete genomeefflux transporter, RND family, MFP subunit2e-1168.2
NC_010338:1394550:1415350141535014165071158Caulobacter sp. K31, complete genomeefflux transporter, RND family, MFP subunit7e-1166.2
NC_007761:3564449:3584663358466335858741212Rhizobium etli CFN 42, complete genomeprobable protein secretion protein, HlyD family2e-1064.7
NC_010994:3666651:3686151368615136873621212Rhizobium etli CIAT 652, complete genomeprobable protein secretion protein, HlyD family5e-1063.5
NC_015138:3022414:3025600302560030267811182Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeRND family efflux transporter MFP subunit7e-1062.8
NC_008380:4078670:4098266409826640994771212Rhizobium leguminosarum bv. viciae 3841, complete genomeputative RND family transporter1e-0962
NC_008027:2397255:2404188240418824054291242Pseudomonas entomophila L48, complete genomemultidrug efflux RND membrane fusion protein MexE2e-0961.2
NC_011988:1036618:1039797103979710410321236Agrobacterium vitis S4 chromosome 2, complete genomeacriflavin resistance protein A2e-0961.2
NC_012850:3454270:3473334347333434745451212Rhizobium leguminosarum bv. trifolii WSM1325, complete genomeefflux transporter, RND family, MFP subunit2e-0961.2
NC_016616:2112211:2141088214108821422751188Dechlorosoma suillum PS chromosome, complete genomeRND family efflux transporter, MFP subunit4e-0960.5
NC_003062:2506959:2520791252079125220231233Agrobacterium tumefaciens str. C58 chromosome circular, completehypothetical protein5e-0960.1
NC_003304:2507000:2520934252093425221361203Agrobacterium tumefaciens str. C58 chromosome circular, completeacriflavin resistance protein A5e-0960.1
NC_009439:918534:9381149381149392651152Pseudomonas mendocina ymp, complete genomeRND family efflux transporter MFP subunit5e-0959.7
NC_015183:2483653:2500945250094525021471203Agrobacterium sp. H13-3 chromosome, complete genomeacriflavin resistance protein A8e-0959.3
NC_015856:3059737:3073516307351630748411326Collimonas fungivorans Ter331 chromosome, complete genomecation/multidrug efflux system, mebrane-fusion component9e-0959.3
NC_012660:3179980:3198358319835831995991242Pseudomonas fluorescens SBW25 chromosome, complete genomeHlyD family secretion protein1e-0858.9
NC_012988:1459961:1504960150496015059701011Methylobacterium extorquens DM4, complete genomeRND efflux transporter, membrane fusion protein subunit2e-0858.2
NC_007973:1821753:1841878184187818431161239Ralstonia metallidurans CH34 chromosome 1, complete sequencesecretion protein HlyD4e-0857
NC_013856:692000:7154747154747166371164Azospirillum sp. B510 plasmid pAB510b, complete sequenceefflux transporter RND family, MFP subunit4e-0857
NC_007947:1703326:1707894170789417090961203Methylobacillus flagellatus KT, complete genomesecretion protein HlyD8e-0855.8
NC_012660:4558122:4561259456125945624431185Pseudomonas fluorescens SBW25 chromosome, complete genomeputative acriflavine resistance protein A1e-0755.5
NC_017075:1:1796617966191591194Rubrivivax gelatinosus IL144, complete genomesecretion protein HlyD family protein2e-0755.1
NC_017060:59500:5967859678609011224Rahnella aquatilis HX2 plasmid PRA1, complete sequenceRND family efflux transporter MFP subunit4e-0753.9
NC_015062:58826:5953959539607621224Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequenceefflux transporter, RND family, MFP subunit4e-0753.9
NC_010002:5691968:5695306569530656965891284Delftia acidovorans SPH-1, complete genomeefflux transporter, RND family, MFP subunit4e-0753.9
NC_007951:1711223:1717679171767917189801302Burkholderia xenovorans LB400 chromosome 1, complete sequenceRND efflux pump, membrane fusion protein, CzcB subfamily6e-0753.1
NC_007484:1229899:1231994123199412331001107Nitrosococcus oceani ATCC 19707, complete genomeSecretion protein HlyD1e-0652
NC_012997:4491871:4492651449265144938201170Teredinibacter turnerae T7901, complete genomeefflux transporter, RND family, MFP subunit1e-0652
NC_015222:3137167:3152336315233631535771242Nitrosomonas sp. AL212 chromosome, complete genomeefflux transporter, RND family, MFP subunit1e-0652
NC_015388:1612000:1615403161540316165841182Desulfobacca acetoxidans DSM 11109 chromosome, complete genomeefflux transporter, RND family, MFP subunit1e-0651.6
NC_008786:2573558:2590816259081625920871272Verminephrobacter eiseniae EF01-2, complete genomeefflux transporter, RND family, MFP subunit2e-0651.2
NC_011894:585637:6008646008646020091146Methylobacterium nodulans ORS 2060, complete genomeefflux transporter, RND family, MFP subunit4e-0650.4
NC_008750:1253354:1278712127871212800221311Shewanella sp. W3-18-1, complete genomeefflux transporter, RND family, MFP subunit6e-0649.7