Pre_GI: BLASTP Hits

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Query: NC_012808:3897751:3908419 Methylobacterium extorquens AM1, complete genome

Start: 3908419, End: 3908862, Length: 444

Host Lineage: Methylobacterium extorquens; Methylobacterium; Methylobacteriaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: First isolated in 1960 in Oxford, England, as an airborne contaminant growing on methylamine. This strain can grow on methylamine or methanol, but not methane. This organism is capable of growth on one-carbon compounds such as methanol. Methanol is oxidized to formaldehyde which is then used metabolically to generate either energy or biomass. These bacteria are commonly found in the environment, especially associated with plants which produce methanol when metabolizing pectin during cell wall synthesis. At least 25 genes are required for this complex process of converting methanol to formaldehyde and this specialized metabolic pathway is of great interest.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012988:4387735:439788543978854398328444Methylobacterium extorquens DM4, complete genomePAS/PAC sensor protein2e-66250
NC_010511:6067000:609034760903476090772426Methylobacterium sp. 4-46 chromosome, complete genomeputative PAS/PAC sensor protein3e-54210
NC_010814:190673:200246200246200680435Geobacter lovleyi SZ, complete genomeputative PAS/PAC sensor protein4e-33139
NC_006958:179690:194602194602195039438Corynebacterium glutamicum ATCC 13032, complete genomeSENSOR HISTIDINE KINASE OF TWO-COMPONENT SYSTEM, FRAGMENT4e-31133
NC_003450:179689:194601194601195038438Corynebacterium glutamicum ATCC 13032, complete genomePAS/PAC domain-containing protein4e-31133
NC_012880:3645304:3661255366125536653794125Dickeya dadantii Ech703, complete genomemulti-sensor hybrid histidine kinase5e-1166.6
NC_007796:2286713:2300593230059323021671575Methanospirillum hungatei JF-1, complete genomesignal transduction histidine kinase regulating citrate/malate metabolism6e-1166.2
NC_007760:4055860:4055860405586040591263267Anaeromyxobacter dehalogenans 2CP-C, complete genomePAS/PAC sensor hybrid histidine kinase1e-1065.5
NC_013960:452493:4651284651284671822055Nitrosococcus halophilus Nc4 chromosome, complete genomePAS sensor protein3e-1063.9
NC_019745:2346970:2351713235171323570075295Gloeocapsa sp. PCC 7428, complete genomemulti-sensor hybrid histidine kinase4e-1063.5
NC_011894:3623500:3624775362477536267631989Methylobacterium nodulans ORS 2060, complete genomePAS/PAC sensor hybrid histidine kinase5e-1063.2
NC_011146:2485625:2505098250509825070351938Geobacter bemidjiensis Bem, complete genomePAS/PAC sensor signal transduction histidine kinase1e-0962
NC_012483:483425:5242655242655266102346Acidobacterium capsulatum ATCC 51196, complete genomesigma-54 dependent transcriptional regulator, Fis family2e-0961.6
NC_003552:1492500:1510392151039215122421851Methanosarcina acetivorans C2A, complete genomesensory transduction histidine kinase2e-0961.2
NC_007355:2039435:2054203205420320570402838Methanosarcina barkeri str. fusaro chromosome 1, complete sequencesensory transduction histidine kinase3e-0960.8
NC_010524:4644587:4685004468500446864761473Leptothrix cholodnii SP-6, complete genomePAS/PAC sensor signal transduction histidine kinase3e-0960.5
NC_015381:2405446:2405446240544624075182073Burkholderia gladioli BSR3 chromosome 1, complete sequenceSensory box histidine kinase5e-0960.1
NC_007484:3358000:3369303336930333715672265Nitrosococcus oceani ATCC 19707, complete genomePAS sensor, serine phosphatase RsbU regulator of sigma subunit6e-0959.7
NC_013037:6209424:6240723624072362449374215Dyadobacter fermentans DSM 18053, complete genomeMCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor8e-0959.3
NC_015138:3160764:3160764316076431653684605Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completesignal transduction histidine kinase with CheB and CheR activity9e-0959.3
NC_009483:1779601:1802418180241818049162499Geobacter uraniireducens Rf4 chromosome, complete genomemulti-sensor signal transduction histidine kinase1e-0858.9
NC_007355:2426000:2426018242601824297643747Methanosarcina barkeri str. fusaro chromosome 1, complete sequencesignal-transducing histidine kinase1e-0858.9
NC_007645:3712272:3726842372684237291782337Hahella chejuensis KCTC 2396, complete genomeSignal transduction histidine kinase1e-0858.5
NC_009675:3067567:3087792308779230907312940Anaeromyxobacter sp. Fw109-5 chromosome, complete genomemulti-sensor signal transduction histidine kinase2e-0857.8
NC_002944:1881405:1903102190310219046401539Mycobacterium avium subsp. paratuberculosis K-10, complete genomehypothetical protein2e-0857.8
NC_015376:1752883:1753907175390717561322226Burkholderia gladioli BSR3 chromosome chromosome 2, completeMulti-sensor signal transduction histidine kinase2e-0857.8
NC_014394:1989418:2011586201158620133101725Gallionella capsiferriformans ES-2 chromosome, complete genomediguanylate cyclase with PAS/PAC sensor2e-0857.8
NC_016599:513357:5346775346775370072331Owenweeksia hongkongensis DSM 17368 chromosome, complete genomePAS domain-containing protein3e-0857.4
NC_008752:2615360:2636818263681826414254608Acidovorax avenae subsp. citrulli AAC00-1, complete genomesignal transduction histidine kinase with CheB and CheR activity3e-0857.4
NC_010322:1817598:1817598181759818199882391Pseudomonas putida GB-1 chromosome, complete genomePAS/PAC sensor-containing diguanylate cyclase3e-0857
NC_010814:3673983:3679023367902336800481026Geobacter lovleyi SZ, complete genomeputative PAS/PAC sensor protein7e-0856.2
NC_017249:7917586:7930165793016579321591995Bradyrhizobium japonicum USDA 6, complete genometwo-component hybrid sensor and regulator9e-0855.8
NC_004463:2344128:2350024235002423519281905Bradyrhizobium japonicum USDA 110, complete genometwo-component hybrid sensor and regulator9e-0855.8
NC_003552:1492500:1513317151331715176874371Methanosarcina acetivorans C2A, complete genomesensory transduction histidine kinase1e-0755.5
NC_003901:2906493:2906493290649329091502658Methanosarcina mazei Go1, complete genomesensory transduction histidine kinase1e-0755.5
NC_014315:3207684:3219592321959232218682277Nitrosococcus watsoni C-113 chromosome, complete genomeputative PAS/PAC sensor protein1e-0755.5
NC_015675:4493758:4506118450611845079111794Mesorhizobium opportunistum WSM2075 chromosome, complete genomesignal transduction histidine kinase1e-0755.5
NC_015136:1101725:1101725110172511059364212Burkholderia sp. CCGE1001 chromosome 1, complete sequencesignal transduction histidine kinase with CheB and CheR activity1e-0755.5
NC_019974:3013338:3038057303805730391091053Natronococcus occultus SP4, complete genomePAS/PAC sensor signal transduction histidine kinase1e-0755.1
NC_007626:3522265:3595421359542135977692349Magnetospirillum magneticum AMB-1, complete genomeSignal transduction histidine kinase1e-0755.1
NC_007484:1975322:1975322197532219774782157Nitrosococcus oceani ATCC 19707, complete genomePAS sensor signal transduction histidine kinase2e-0754.7
NC_014657:473479:4836754836754856812007Caldicellulosiruptor owensensis OL chromosome, complete genome2e-0754.3
NC_011832:2668337:2683714268371426862482535Candidatus Methanosphaerula palustris E1-9c, complete genomePAS/PAC sensor signal transduction histidine kinase3e-0753.9
NC_015638:3113253:3117270311727031191051836Lacinutrix sp. 5H-3-7-4 chromosome, complete genomePAS/PAC sensor signal transduction histidine kinase4e-0753.9
NC_008313:2142397:2158811215881121604151605Ralstonia eutropha H16 chromosome 1, complete sequencesignal transduction histidine kinase containing PAS/PAC sensor domain7e-0752.8
NC_008027:2397255:2397255239725523993662112Pseudomonas entomophila L48, complete genomesensory box protein1e-0652
NC_013665:1766158:176615817661581767072915Methanocella paludicola SANAE, complete genomeputative signaling protein1e-0652
NC_003295:199354:2122532122532136291377Ralstonia solanacearum GMI1000, complete genomePROBABLE TRANSMEMBRANE TWO COMPONENT SYSTEM SENSOR KINASE TRANSCRIPTION REGULATOR PROTEIN1e-0651.6
NC_007650:1192310:1192310119231011947482439Burkholderia thailandensis E264 chromosome II, complete sequencesensory box histidine kinase2e-0651.6
NC_011757:517000:5364535364535397223270Methylobacterium chloromethanicum CM4, complete genomemulti-sensor hybrid histidine kinase2e-0651.6
NC_009483:2640403:2640403264040326430782676Geobacter uraniireducens Rf4 chromosome, complete genomePAS/PAC sensor signal transduction histidine kinase2e-0651.6
NC_012968:1191037:1199115119911512005601446Methylotenera mobilis JLW8, complete genomediguanylate cyclase with PAS/PAC and GAF sensors2e-0651.2
NC_016631:4472987:449092144909214491559639Granulicella mallensis MP5ACTX8 chromosome, complete genomePAS sensor protein2e-0651.2
NC_011894:6708970:6710443671044367124251983Methylobacterium nodulans ORS 2060, complete genomePAS/PAC sensor hybrid histidine kinase3e-0650.4
NC_013922:138246:1783721783721794301059Natrialba magadii ATCC 43099 chromosome, complete genomePAS/PAC sensor signal transduction histidine kinase5e-0650.1
NC_014844:3469848:3485824348582434885982775Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomePAS sensor protein5e-0649.7
NC_002947:4167500:4233549423354942350601512Pseudomonas putida KT2440, complete genomesensory box protein5e-0649.7
NC_020388:578500:6015626015626038172256Natronomonas moolapensis 8.8.11 complete genomesensor box histidine kinase7e-0649.7
NC_009454:1462930:1480137148013714825272391Pelotomaculum thermopropionicum SI, complete genomehypothetical protein8e-0649.3
NC_009523:4222696:4226748422674842286971950Roseiflexus sp. RS-1 chromosome, complete genomeputative PAS/PAC sensor protein8e-0649.3