Pre_GI: BLASTN Hits

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Query: NC_012668:368305 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 368305, End: 405314, Length: 37010

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_002505:23856923856927414635578Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete046680BLASTN svgBLASTP svg
NC_015633:41358741358744184328257Vibrio anguillarum 775 chromosome chromosome I, complete sequence01342BLASTN svgBLASTP svg
NC_002506:207097*20709723205424958Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete5e-92347BLASTN svgBLASTP svg
NC_002506:37062937062943982869200Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete1e-89339BLASTN svgBLASTP svg
NC_012691:22250002225000224630921310Tolumonas auensis DSM 9187, complete genome7e-48200BLASTN svgBLASTP svg
NC_015633:46114346114348763326491Vibrio anguillarum 775 chromosome chromosome I, complete sequence7e-45190BLASTN svgBLASTP svg
NC_015567:16604621660462170120640745Serratia sp. AS9 chromosome, complete genome9e-26127BLASTN svgBLASTP svg
NC_015566:16592881659288170119441907Serratia sp. AS12 chromosome, complete genome9e-26127BLASTN svgBLASTP svg
NC_009783:64950064950066965220153Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequence2e-23119BLASTN svgBLASTP svg
NC_007946:22318722231872226061428743Escherichia coli UTI89, complete genome2e-23119BLASTN svgBLASTP svg
NC_020211:17045001704500175039445895Serratia marcescens WW4, complete genome1e-21113BLASTN svgBLASTP svg
NC_013956:27496852749685278184532161Pantoea ananatis LMG 20103 chromosome, complete genome5e-21111BLASTN svgBLASTP svg
NC_008563:21822702182270221156429295Escherichia coli APEC O1, complete genome8e-20107BLASTN svgBLASTP svg
NC_008253:21341102134110216406229953Escherichia coli 536, complete genome8e-20107BLASTN svgBLASTP svg
NC_004431:23839012383901241472630826Escherichia coli CFT073, complete genome8e-20107BLASTN svgBLASTP svg
NC_004337:3761865*3761865378609924235Shigella flexneri 2a str. 301, complete genome3e-19105BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome3e-19105BLASTN svgBLASTP svg
NC_000913:20925592092559212109928541Escherichia coli K12, complete genome3e-19105BLASTN svgBLASTP svg
CP002185:22337322233732226508731356Escherichia coli W, complete genome3e-19105BLASTN svgBLASTP svg
AC_000091:20966722096672212665729986Escherichia coli W3110 DNA, complete genome3e-19105BLASTN svgBLASTP svg
NC_004431:4223232*4223232424609922868Escherichia coli CFT073, complete genome3e-19105BLASTN svgBLASTP svg
NC_004741:3992384*3992384401736124978Shigella flexneri 2a str. 2457T, complete genome3e-19105BLASTN svgBLASTP svg
NC_007384:3956465*3956465398127224808Shigella sonnei Ss046, complete genome3e-19105BLASTN svgBLASTP svg
NC_010473:21835672183567221209928533Escherichia coli str. K-12 substr. DH10B, complete genome3e-19105BLASTN svgBLASTP svg
NC_008563:40835584083558410710723550Escherichia coli APEC O1, complete genome3e-19105BLASTN svgBLASTP svg
NC_008258:3995553*3995553402149425942Shigella flexneri 5 str. 8401, complete genome3e-19105BLASTN svgBLASTP svg
NC_008253:3896704*3896704392023823535Escherichia coli 536, complete genome3e-19105BLASTN svgBLASTP svg
NC_007946:4050762*4050762407361822857Escherichia coli UTI89, complete genome3e-19105BLASTN svgBLASTP svg
NC_014839:253961*25396131222658266Pantoea sp. At-9b plasmid pPAT9B02, complete sequence1e-18103BLASTN svgBLASTP svg
NC_003143:34467403446740346555618817Yersinia pestis CO92, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_004088:11968751196875123427537401Yersinia pestis KIM, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_005810:87267287267291210839437Yersinia pestis biovar Microtus str. 91001, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_008149:11226931122693115815435462Yersinia pestis Nepal516, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_008150:28784502878450291443935990Yersinia pestis Antiqua, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_010159:12880001288000132559537596Yersinia pestis Angola, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_010465:34653513465351350059935249Yersinia pseudotuberculosis YPIII, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_015224:17638481763848179825034403Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-1799.6BLASTN svgBLASTP svg
CP002185:3998112*3998112402163723526Escherichia coli W, complete genome8e-1797.6BLASTN svgBLASTP svg
CP002516:88500*8850011436625867Escherichia coli KO11, complete genome8e-1797.6BLASTN svgBLASTP svg
CU928160:21559472155947218736531419Escherichia coli IAI1 chromosome, complete genome8e-1797.6BLASTN svgBLASTP svg
NC_008258:21006462100646213188931244Shigella flexneri 5 str. 8401, complete genome8e-1797.6BLASTN svgBLASTP svg
NC_012917:15060831506083154696940887Pectobacterium carotovorum subsp. carotovorum PC1, complete genome8e-1797.6BLASTN svgBLASTP svg
NC_003198:598000*59800061851020511Salmonella enterica subsp. enterica serovar Typhi str. CT18,3e-1695.6BLASTN svgBLASTP svg
NC_004337:20987362098736212859929864Shigella flexneri 2a str. 301, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_004741:20816492081649211300631358Shigella flexneri 2a str. 2457T, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_011080:61042861042863159921172Salmonella enterica subsp. enterica serovar Newport str. SL254,3e-1695.6BLASTN svgBLASTP svg
NC_011083:654479*65447967531220834Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,3e-1695.6BLASTN svgBLASTP svg
CP002516:18464921846492187615129660Escherichia coli KO11, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_011026:24503252450325248697436650Chloroherpeton thalassium ATCC 35110, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_011740:21351412135141215307917939Escherichia fergusonii ATCC 35469, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_011750:10349191034919106622831310Escherichia coli IAI39 chromosome, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_012912:3853377*3853377389607042694Dickeya zeae Ech1591, complete genome1e-1593.7BLASTN svgBLASTP svg
CU928145:23244952324495235493330439Escherichia coli 55989 chromosome, complete genome5e-1591.7BLASTN svgBLASTP svg
NC_002655:28396002839600287010630507Escherichia coli O157:H7 EDL933, complete genome5e-1591.7BLASTN svgBLASTP svg
NC_002695:27693872769387279989230506Escherichia coli O157:H7 str. Sakai, complete genome5e-1591.7BLASTN svgBLASTP svg
NC_006155:11913071191307123066739361Yersinia pseudotuberculosis IP 32953, complete genome5e-1591.7BLASTN svgBLASTP svg
NC_011748:23244952324495235493330439Escherichia coli 55989, complete genome5e-1591.7BLASTN svgBLASTP svg
NC_013592:713036*71303676182148786Dickeya dadantii Ech586, complete genome5e-1591.7BLASTN svgBLASTP svg
NC_007606:3784847*3784847380859923753Shigella dysenteriae Sd197, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_009801:22761312276131230753131401Escherichia coli E24377A, complete genome2e-1489.7BLASTN svgBLASTP svg
AP010958:25040722504072253559331522Escherichia coli O103:H2 str. 12009 DNA, complete genome8e-1487.7BLASTN svgBLASTP svg
NC_006905:65173265173267724625515Salmonella enterica subsp. enterica serovar Choleraesuis str8e-1487.7BLASTN svgBLASTP svg
NC_011149:58889558889560977120877Salmonella enterica subsp. enterica serovar Agona str. SL483,8e-1487.7BLASTN svgBLASTP svg
NC_011750:4307166*4307166433102623861Escherichia coli IAI39 chromosome, complete genome8e-1487.7BLASTN svgBLASTP svg
NC_014012:16769831676983170572328741Shewanella violacea DSS12, complete genome8e-1487.7BLASTN svgBLASTP svg
NC_014121:33996853399685343519435510Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete8e-1487.7BLASTN svgBLASTP svg
NC_015061:3840463*3840463391463974177Rahnella sp. Y9602 chromosome, complete genome8e-1487.7BLASTN svgBLASTP svg
NC_009832:17191491719149175798638838Serratia proteamaculans 568, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_008577:49074974907497493408326587Shewanella sp. ANA-3 chromosome 1, complete sequence1e-1283.8BLASTN svgBLASTP svg
NC_007912:26975812697581271653118951Saccharophagus degradans 2-40, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_007613:86408486408489531131228Shigella boydii Sb227, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_008570:3220539*3220539328055660018Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome5e-1281.8BLASTN svgBLASTP svg
NC_009792:46589094658909468286123953Citrobacter koseri ATCC BAA-895, complete genome5e-1281.8BLASTN svgBLASTP svg
NC_011751:23958822395882242503029149Escherichia coli UMN026 chromosome, complete genome5e-1281.8BLASTN svgBLASTP svg
NC_012880:38273903827390385759930210Dickeya dadantii Ech703, complete genome5e-1281.8BLASTN svgBLASTP svg
NC_018679:40284124028412404756319152Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, complete2e-1179.8BLASTN svgBLASTP svg
NC_011751:4251296*4251296427504623751Escherichia coli UMN026 chromosome, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_011740:4007000*4007000403180124802Escherichia fergusonii ATCC 35469, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_008321:46318664631866465846026595Shewanella sp. MR-4, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_008577:1885809*1885809190718721379Shewanella sp. ANA-3 chromosome 1, complete sequence3e-1075.8BLASTN svgBLASTP svg
NC_002655:4606000*4606000462939223393Escherichia coli O157:H7 EDL933, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_000913:3786124*3786124381459928476Escherichia coli K12, complete genome1e-0973.8BLASTN svgBLASTP svg
CU928160:3862935*3862935388577322839Escherichia coli IAI1 chromosome, complete genome1e-0973.8BLASTN svgBLASTP svg
CU928145:4167043*4167043419159624554Escherichia coli 55989 chromosome, complete genome1e-0973.8BLASTN svgBLASTP svg
AP010958:4668181*4668181469259924419Escherichia coli O103:H2 str. 12009 DNA, complete genome1e-0973.8BLASTN svgBLASTP svg
AC_000091:3827856*3827856385515527300Escherichia coli W3110 DNA, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_002695:4537000*4537000455962722628Escherichia coli O157:H7 str. Sakai, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_006511:3690828*3690828371609925272Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC1e-0973.8BLASTN svgBLASTP svg
NC_007335:11590001159000117708118082Prochlorococcus marinus str. NATL2A, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_009801:4108179*4108179413170423526Escherichia coli E24377A, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_010102:38515003851500387645224953Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,1e-0973.8BLASTN svgBLASTP svg
NC_010473:3883701*3883701391159927899Escherichia coli str. K-12 substr. DH10B, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_011080:3875320*3875320390054525226Salmonella enterica subsp. enterica serovar Newport str. SL254,1e-0973.8BLASTN svgBLASTP svg
NC_011748:4167043*4167043419159624554Escherichia coli 55989, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_010498:4031500*4031500405311121612Escherichia coli SMS-3-5, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_013282:28277572827757286060332847Cronobacter turicensis, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_013508:63914639148559921686Edwardsiella tarda EIB202, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_020063:974369743612048123046Enterobacteriaceae bacterium strain FGI 57, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_012982:18999731899973192773327761Hirschia baltica ATCC 49814, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_004547:164000*16400019143427435Erwinia carotovora subsp. atroseptica SCRI1043, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_006905:21753612175361220410628746Salmonella enterica subsp. enterica serovar Choleraesuis str3e-0765.9BLASTN svgBLASTP svg
NC_004631:3910451*3910451393705126601Salmonella enterica subsp. enterica serovar Typhi Ty2, complete3e-0765.9BLASTN svgBLASTP svg
NC_004459:767127*76712778659919473Vibrio vulnificus CMCP6 chromosome I, complete sequence3e-0765.9BLASTN svgBLASTP svg
NC_003198:3924952*3924952395155226601Salmonella enterica subsp. enterica serovar Typhi str. CT18,3e-0765.9BLASTN svgBLASTP svg
NC_003197:3902500*3902500392838425885Salmonella typhimurium LT2, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_006905:3845000*3845000386969524696Salmonella enterica subsp. enterica serovar Choleraesuis str3e-0765.9BLASTN svgBLASTP svg
NC_007613:3637832*3637832366214824317Shigella boydii Sb227, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_009800:3821824*3821824384534923526Escherichia coli HS, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_015424:3112637*3112637318003367397Aeromonas veronii B565 chromosome, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_011149:3822000*3822000384676224763Salmonella enterica subsp. enterica serovar Agona str. SL483,3e-0765.9BLASTN svgBLASTP svg
NC_011083:3915500*3915500393961024111Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,3e-0765.9BLASTN svgBLASTP svg
NC_010658:3774110*3774110379937225263Shigella boydii CDC 3083-94, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_010468:80000*8000010593725938Escherichia coli ATCC 8739, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_020181:36050036050040550545006Enterobacter aerogenes EA1509E, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_012968:1108687*1108687113956830882Methylotenera mobilis JLW8, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_011901:2202690*2202690223230229613Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete1e-0663.9BLASTN svgBLASTP svg
NC_015589:37118213711821375793046110Desulfotomaculum ruminis DSM 2154 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_011753:20617820617823311626939Vibrio splendidus LGP32 chromosome 1, complete genome4e-0661.9BLASTN svgBLASTP svg