Pre_GI: BLASTN Hits

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Query: NC_012668:2258854 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 2258854, End: 2295167, Length: 36314

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015633:29195012919501294340723907Vibrio anguillarum 775 chromosome chromosome I, complete sequence07000BLASTN svgBLASTP svg
NC_015633:2565753*2565753261159945847Vibrio anguillarum 775 chromosome chromosome I, complete sequence02091BLASTN svgBLASTP svg
NC_004603:1961432*1961432198465023219Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete0858BLASTN svgBLASTP svg
NC_014121:2745097*2745097276822023124Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete6e-76293BLASTN svgBLASTP svg
NC_007969:16645001664500168581021311Psychrobacter cryohalolentis K5, complete genome6e-76293BLASTN svgBLASTP svg
NC_015633:46114346114348763326491Vibrio anguillarum 775 chromosome chromosome I, complete sequence7e-48200BLASTN svgBLASTP svg
NC_015633:2327500*2327500235796830469Vibrio anguillarum 775 chromosome chromosome I, complete sequence7e-45190BLASTN svgBLASTP svg
NC_002505:86078986078988990629118Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete1e-37167BLASTN svgBLASTP svg
NC_021066:2226826*2226826225422627401Raoultella ornithinolytica B6, complete genome2e-26129BLASTN svgBLASTP svg
NC_004459:20254362025436205524629811Vibrio vulnificus CMCP6 chromosome I, complete sequence1e-24123BLASTN svgBLASTP svg
NC_012779:996879996879102037523497Edwardsiella ictaluri 93-146, complete genome8e-20107BLASTN svgBLASTP svg
NC_007645:2294553*2294553233310238550Hahella chejuensis KCTC 2396, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_020064:1611820*1611820163518523366Serratia marcescens FGI94, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_014500:2934232*2934232295717222941Dickeya dadantii 3937 chromosome, complete genome7e-1487.7BLASTN svgBLASTP svg
NC_013457:979102*97910299831619215Vibrio sp. Ex25 chromosome 2, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_012751:899394*89939492562326230Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), complete3e-1385.7BLASTN svgBLASTP svg
NC_006370:84720484720486812520922Photobacterium profundum SS9 chromosome 1, complete sequence3e-1385.7BLASTN svgBLASTP svg
NC_015497:45643394564339458876824430Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_011186:81982881982884300723180Vibrio fischeri MJ11 chromosome II, complete sequence1e-1283.8BLASTN svgBLASTP svg
NC_003198:3924952*3924952395155226601Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-1179.8BLASTN svgBLASTP svg
NC_004631:3910451*3910451393705126601Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-1179.8BLASTN svgBLASTP svg
NC_014500:20191132019113204779528683Dickeya dadantii 3937 chromosome, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_005140:96026196026198150721247Vibrio vulnificus YJ016 chromosome II, complete sequence7e-1177.8BLASTN svgBLASTP svg
NC_002506:207097*20709723205424958Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete4e-0971.9BLASTN svgBLASTP svg
NC_003197:3902500*3902500392838425885Salmonella typhimurium LT2, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_010102:38515003851500387645224953Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,4e-0971.9BLASTN svgBLASTP svg
NC_011083:3915500*3915500393961024111Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,4e-0971.9BLASTN svgBLASTP svg
NC_012962:34999003499900355871558816Photorhabdus asymbiotica, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_013508:2356865*2356865238859931735Edwardsiella tarda EIB202, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_004741:3240909*3240909326236621458Shigella flexneri 2a str. 2457T, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_004337:32497913249791327283723047Shigella flexneri 2a str. 301, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_002695:3994970*3994970401809923130Escherichia coli O157:H7 str. Sakai, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_000913:3256307*3256307327821621910Escherichia coli K12, complete genome2e-0869.9BLASTN svgBLASTP svg
CU928160:3344746*3344746336309918354Escherichia coli IAI1 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
CU928145:3608917*3608917363276823852Escherichia coli 55989 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
CP002516:613462*61346263169018229Escherichia coli KO11, complete genome2e-0869.9BLASTN svgBLASTP svg
CP002185:3475991*3475991350005224062Escherichia coli W, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_008258:32247213224721324719422474Shigella flexneri 5 str. 8401, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_009800:3307123*3307123332547318351Escherichia coli HS, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_010334:609636*60963663741127776Shewanella halifaxensis HAW-EB4, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_012962:10681021068102112169753596Photorhabdus asymbiotica, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_011751:37107863710786373513424349Escherichia coli UMN026 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_011750:3768692*3768692379303824347Escherichia coli IAI39 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_011748:3608917*3608917363276823852Escherichia coli 55989, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_010658:3014371*3014371303259918229Shigella boydii CDC 3083-94, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_010498:34885133488513350850119989Escherichia coli SMS-3-5, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_010473:3354052*3354052337759923548Escherichia coli str. K-12 substr. DH10B, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_010468:61381261381263388120070Escherichia coli ATCC 8739, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_004460:12371291237129126309925971Vibrio vulnificus CMCP6 chromosome II, complete sequence3e-0765.9BLASTN svgBLASTP svg
NC_012779:2424967*2424967244959924633Edwardsiella ictaluri 93-146, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_012997:81755381755384234124789Teredinibacter turnerae T7901, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_013512:126915*12691515204625132Sulfurospirillum deleyianum DSM 6946, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_003198:3042000*3042000306436622367Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-0663.9BLASTN svgBLASTP svg
NC_004631:3030580*3030580304986119282Salmonella enterica subsp. enterica serovar Typhi Ty2, complete1e-0663.9BLASTN svgBLASTP svg
NC_008700:27883632788363281549227130Shewanella amazonensis SB2B, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_008700:672326*67232669663424309Shewanella amazonensis SB2B, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_009725:69223769223774659954363Bacillus amyloliquefaciens FZB42, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_012660:52423925242392526802925638Pseudomonas fluorescens SBW25 chromosome, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_008750:23320002332000235419622197Shewanella sp. W3-18-1, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_010506:51559515155951517924523295Shewanella woodyi ATCC 51908, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_011772:4487378*4487378452232234945Bacillus cereus G9842, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_012969:15743301574330160402729698Methylovorus glucosetrophus SIP3-4 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_013457:1703201*1703201172926026060Vibrio sp. Ex25 chromosome 2, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_015410:96952696952699007820553Pseudomonas mendocina NK-01 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_008577:3738758*3738758376351324756Shewanella sp. ANA-3 chromosome 1, complete sequence4e-0661.9BLASTN svgBLASTP svg