Pre_GI: BLASTN Hits

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Query: NC_012668:1623350 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 1623350, End: 1654779, Length: 31430

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015633:29195012919501294340723907Vibrio anguillarum 775 chromosome chromosome I, complete sequence07000BLASTN svgBLASTP svg
NC_015633:2565753*2565753261159945847Vibrio anguillarum 775 chromosome chromosome I, complete sequence02091BLASTN svgBLASTP svg
NC_007969:16645001664500168581021311Psychrobacter cryohalolentis K5, complete genome6e-76293BLASTN svgBLASTP svg
NC_012779:996879996879102037523497Edwardsiella ictaluri 93-146, complete genome7e-20107BLASTN svgBLASTP svg
NC_015497:45643394564339458876824430Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_008577:41833614183361420632622966Shewanella sp. ANA-3 chromosome 1, complete sequence2e-1179.8BLASTN svgBLASTP svg
NC_011186:81982881982884300723180Vibrio fischeri MJ11 chromosome II, complete sequence2e-1075.8BLASTN svgBLASTP svg
NC_008750:23320002332000235419622197Shewanella sp. W3-18-1, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_005140:44435344435346518620834Vibrio vulnificus YJ016 chromosome II, complete sequence1e-0973.8BLASTN svgBLASTP svg
NC_004460:17180881718088173988521798Vibrio vulnificus CMCP6 chromosome II, complete sequence1e-0973.8BLASTN svgBLASTP svg
NC_011184:2421687*2421687244877527089Vibrio fischeri MJ11 chromosome I, complete sequence4e-0971.9BLASTN svgBLASTP svg
NC_012660:4558122*4558122459234134220Pseudomonas fluorescens SBW25 chromosome, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_010334:609636*60963663741127776Shewanella halifaxensis HAW-EB4, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_014394:80873480873483220323470Gallionella capsiferriformans ES-2 chromosome, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_010382:37838793783879380820124323Lysinibacillus sphaericus C3-41, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_008577:3738758*3738758376351324756Shewanella sp. ANA-3 chromosome 1, complete sequence6e-0867.9BLASTN svgBLASTP svg
NC_008322:72261272261274059917988Shewanella sp. MR-7, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009725:69223769223774659954363Bacillus amyloliquefaciens FZB42, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_014923:5787493*5787493583009942607Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete9e-0763.9BLASTN svgBLASTP svg
NC_015675:63421646342164638209939936Mesorhizobium opportunistum WSM2075 chromosome, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_019973:5716453*5716453575629339841Mesorhizobium australicum WSM2073, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_020209:2119845*2119845214457424730Pseudomonas poae RE*1-1-14, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_005140:96026196026198150721247Vibrio vulnificus YJ016 chromosome II, complete sequence4e-0661.9BLASTN svgBLASTP svg