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Query: NC_012668:62500:71950 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 71950, End: 73182, Length: 1233

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016445:2938887:2958194295819429594261233Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completehypothetical protein0834
NC_002505:514732:5471585471585483901233Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completehypothetical protein0834
NC_004547:2810151:2814296281429628155131218Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative signal transduction protein3e-44179
NC_016803:2431672:2431672243167224329221251Desulfovibrio desulfuricans ND132 chromosome, complete genomediguanylate phosphodiesterase7e-43174
NC_011901:342777:3650433650433662541212Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completesignal transduction protein2e-40167
NC_006322:3198829:3211668321166832128881221Bacillus licheniformis ATCC 14580, complete genomeYuxH5e-39162
NC_014972:3688000:3688057368805736892801224Desulfobulbus propionicus DSM 2032 chromosome, complete genomediguanylate phosphodiesterase6e-36152
NC_015222:1607757:1618718161871816199561239Nitrosomonas sp. AL212 chromosome, complete genomediguanylate phosphodiesterase metal dependent hydrolase domain2e-31137
NC_015731:990000:1010125101012510113631239Nitrosomonas sp. Is79A3 chromosome, complete genomediguanylate phosphodiesterase with metal dependent hydrolase domain7e-31135
NC_018704:176088:1784791784791797171239Amphibacillus xylanus NBRC 15112, complete genomehypothetical protein3e-29129
NC_016616:3585435:3585435358543535866971263Dechlorosoma suillum PS chromosome, complete genomeputative signal transduction protein containing EAL and modified HD-GYP domains2e-28127
NC_014614:6115:88628862100791218Clostridium sticklandii, complete genomeputative phosphodiesterase2e-26120
NC_013223:2279869:2285460228546022867041245Desulfohalobium retbaense DSM 5692, complete genomediguanylate phosphodiesterase1e-21104
NC_012724:2611000:2612949261294926141811233Burkholderia glumae BGR1 chromosome 1, complete genomeDiguanylate phosphodiesterase8e-21101
NC_010730:1519458:1523191152319115244021212Sulfurihydrogenibium sp. YO3AOP1, complete genomeputative signal transduction protein8e-2098.6
NC_012721:2406874:2424528242452824256821155Burkholderia glumae BGR1 chromosome 2, complete genomeDiguanylate phosphodiesterase2e-1790.5
NC_012440:585568:5855685855685875321965Persephonella marina EX-H1, complete genomeresponse regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor3e-0653.1
NC_016002:1048420:1051518105151810529331416Pseudogulbenkiania sp. NH8B, complete genomeputative signal transduction protein1e-0551.6