Pre_GI: BLASTP Hits

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Query: NC_012668:442601:449606 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 449606, End: 450820, Length: 1215

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002505:168532:1881661881661893801215Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completetransposase, putative0847
NC_016445:2593800:2613434261343426146361203Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completehypothetical protein0839
NC_015633:338000:3508423508423520561215Vibrio anguillarum 775 chromosome chromosome I, complete sequencetransposase0834
NC_016944:168530:1881641881641893781215Vibrio cholerae IEC224 chromosome I, complete sequencehypothetical protein0811
NC_011663:5016488:5022344502234450236811338Shewanella baltica OS223 chromosome, complete genomeintegrase family protein3e-80299
NC_009997:5188221:5193694519369451950191326Shewanella baltica OS195, complete genomeintegrase family protein1e-62240
NC_009665:5072413:5077871507787150791961326Shewanella baltica OS185 chromosome, complete genomephage integrase family protein1e-62240
NC_016901:5130147:5135620513562051369451326Shewanella baltica OS678 chromosome, complete genomeintegrase family protein1e-62240
NC_014541:1753776:1770216177021617716521437Ferrimonas balearica DSM 9799 chromosome, complete genomehypothetical protein2e-23110
NC_015554:4724245:4730477473047747317691293Alteromonas sp. SN2 chromosome, complete genomebacteriophage integrase/recombinase8e-21101
NC_009901:4216206:4235342423534242367211380Shewanella pealeana ATCC 700345, complete genomeintegrase family protein5e-1995.9
NC_006856:95830:1014991014991030281530Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein1e-1894.7
NC_006856:95830:1016371016371030281392Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein1e-1894.4
NC_020209:47504:1032551032551043281074Pseudomonas poae RE*1-1-14, complete genomephage integrase6e-1892
NC_012856:2931995:2938769293876929401901422Ralstonia pickettii 12D chromosome 1, complete genomeintegrase family protein2e-1584
NC_018678:554675:5609415609415624911551Alteromonas macleodii str. 'English Channel 673' chromosome,hypothetical protein2e-1480.1
NC_015633:2919501:2933015293301529346431629Vibrio anguillarum 775 chromosome chromosome I, complete sequencehypothetical protein4e-1479.3
NC_012668:2258854:2264628226462822662531626Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein8e-1478.6
NC_012668:1688500:1747460174746017490851626Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein8e-1478.6
NC_012668:1623350:1627857162785716294821626Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein8e-1478.6
NC_012668:160357:1829891829891846141626Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein8e-1478.6
NC_016613:2596464:2601101260110126025041404Vibrio sp. EJY3 chromosome 1, complete sequencephage integrase family protein2e-1377.4
NC_014323:4665610:4698545469854546998101266Herbaspirillum seropedicae SmR1 chromosome, complete genomebacteriophage integrase/recombinase5e-1375.9
NC_005773:1333863:1349050134905013501981149Pseudomonas syringae pv. phaseolicola 1448A, complete genomesite-specific recombinase, phage integrase family1e-1274.7
NC_008740:1357312:1369539136953913706781140Marinobacter aquaeolei VT8, complete genomephage integrase family protein2e-1273.9
NC_016616:1182125:1199660119966012007841125Dechlorosoma suillum PS chromosome, complete genomesite-specific recombinase XerD1e-0964.7
NC_008740:220642:2274462274462285641119Marinobacter aquaeolei VT8, complete genomephage integrase family protein9e-0858.5
NC_018704:176088:1894101894101905701161Amphibacillus xylanus NBRC 15112, complete genomeputative integrase4e-0652.8