Pre_GI: BLASTP Hits

Some Help

Query: NC_012668:442601:447232 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 447232, End: 448071, Length: 840

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016944:168530:190925190925191764840Vibrio cholerae IEC224 chromosome I, complete sequenceDNA processing protein5e-164576
NC_016445:2593800:261618326161832617022840Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completehypothetical protein5e-164576
NC_002505:168532:190915190915191754840Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completehypothetical protein5e-164576
NC_015633:338000:353596353596354435840Vibrio anguillarum 775 chromosome chromosome I, complete sequencehypothetical protein6e-144509
AC_000091:3976888:399418839941883995030843Escherichia coli W3110 DNA, complete genomepredicted DNA (exogenous) processing protein1e-103376
NC_000913:3624826:364340836434083644250843Escherichia coli K12, complete genomepredicted DNA (exogenous) processing protein1e-103376
NC_009800:3685651:368789636878963688738843Escherichia coli HS, complete genomeDNA utilization protein YhiR1e-103376
NC_010468:231000:247229247229248071843Escherichia coli ATCC 8739, complete genomeprotein of unknown function DUF5191e-103376
NC_010473:3722571:374115337411533741995843Escherichia coli str. K-12 substr. DH10B, complete genomepredicted DNA (exogenous) processing protein1e-103376
NC_012759:3529657:353190235319023532744843Escherichia coli BW2952 chromosome, complete genomeputative DNA processing protein1e-103376
CP002516:246767:264366264366265208843Escherichia coli KO11, complete genomeprotein of unknown function DUF5193e-103374
NC_011751:4074586:409297740929774093819843Escherichia coli UMN026 chromosome, complete genomeputative DNA (exogenous) processing protein3e-103374
NC_011748:3983432:401019340101934011035843Escherichia coli 55989, complete genomeputative DNA (exogenous) processing protein3e-103374
NC_010498:3838419:385681038568103857652843Escherichia coli SMS-3-5, complete genomeDNA utilization protein YhiR3e-103374
NC_009801:3956917:395691739569173957759843Escherichia coli E24377A, complete genomeDNA utilization protein YhiR5e-103374
NC_013941:4249871:426828842682884269130843Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeDNA utilization protein YhiR5e-103374
CU928160:3709081:370908137090813709923843Escherichia coli IAI1 chromosome, complete genomeputative DNA (exogenous) processing protein3e-103374
CU928145:3983432:401019340101934011035843Escherichia coli 55989 chromosome, complete genomeputative DNA (exogenous) processing protein3e-103374
CP002185:3822470:384086538408653841707843Escherichia coli W, complete genomepredicted DNA (exogenous) processing protein3e-103374
NC_007613:3470314:349034534903453491187843Shigella boydii Sb227, complete genomehypothetical protein3e-103374
NC_011741:3709081:370908137090813709923843Escherichia coli IAI1 chromosome, complete genomeputative DNA (exogenous) processing protein3e-103374
NC_012947:248000:264259264259265101843Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein3e-103374
NC_012967:3549880:357607535760753576917843Escherichia coli B str. REL606 chromosome, complete genomeputative DNA (exogenous) processing protein3e-103374
NC_016822:3923908:394361839436183944460843Shigella sonnei 53G, complete genomeputative DNA processing protein3e-103374
NC_016902:246767:264366264366265208843Escherichia coli KO11FL chromosome, complete genomehypothetical protein3e-103374
NC_011415:3887997:389024238902423891084843Escherichia coli SE11 chromosome, complete genomehypothetical protein2e-102371
NC_014121:5000069:502482850248285025670843Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein4e-102370
NC_004337:3590323:362107136210713621913843Shigella flexneri 2a str. 301, complete genomehypothetical protein1e-101369
NC_004741:4132056:415193541519354152777843Shigella flexneri 2a str. 2457T, complete genomehypothetical protein1e-101369
NC_017328:3655876:365587636558763656769894Shigella flexneri 2002017 chromosome, complete genomeDNA utilization protein YhiR1e-101369
NC_008258:3581583:358158335815833582476894Shigella flexneri 5 str. 8401, complete genomehypothetical protein1e-101369
NC_006905:3717306:372177737217773722619843Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein2e-100365
NC_013416:386301:404874404874405719846Aggregatibacter actinomycetemcomitans D11S-1, complete genomeOrfJ4e-93341
NC_016513:689689:708267708267709112846Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completetyrosine recombinase XerD4e-93341
NC_009092:4337617:434981643498164350655840Shewanella loihica PV-4, complete genomeprotein of unknown function DUF5191e-73276
NC_015424:748785:764847764847765701855Aeromonas veronii B565 chromosome, complete genomeprotein involved in external DNA uptake9e-71266
NC_008570:4009762:401413940141394014993855Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeprotein involved in external DNA uptake1e-70266
NC_009348:3819271:382162938216293822483855Aeromonas salmonicida subsp. salmonicida A449, complete genomeprotein involved in catabolism of external DNA2e-70265
NC_016002:2946702:294759929475992948444846Pseudogulbenkiania sp. NH8B, complete genomehypothetical protein4e-66251
NC_009439:608500:621578621578622426849Pseudomonas mendocina ymp, complete genomehypothetical protein3e-61235
NC_008783:507939:526474526474527340867Bartonella bacilliformis KC583, complete genomeyhiR family protein3e-59228
NC_010410:480518:484154484154485011858Acinetobacter baumannii AYE, complete genomehypothetical protein6e-51201
NC_010611:3413333:342882934288293429686858Acinetobacter baumannii ACICU, complete genomeProtein involved in catabolism of external DNA6e-51201
NC_006677:2042387:206315320631532063992840Gluconobacter oxydans 621H, complete genomehypothetical protein3e-50198
NC_009484:1627734:164673216467321647553822Acidiphilium cryptum JF-5 chromosome, complete genomehypothetical protein4e-45181
NC_015186:1698000:171699417169941717815822Acidiphilium multivorum AIU301, complete genomehypothetical protein4e-45181
NC_009049:2131017:213283921328392133621783Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequenceprotein of unknown function DUF5193e-39162
NC_015976:2900891:291906229190622919892831Sphingobium sp. SYK-6, complete genomehypothetical protein2e-38159