Pre_GI: BLASTP Hits

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Query: NC_012668:2744393:2751667 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 2751667, End: 2751825, Length: 159

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009457:351512:402719402719402877159Vibrio cholerae O395 chromosome 2, complete sequencephage family integrase3e-23107
NC_002505:1892430:1896092189609218973271236Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completeintegrase, phage family4e-1993.2
NC_009457:1444449:1449205144920514504401236Vibrio cholerae O395 chromosome 2, complete sequencephage family integrase4e-1993.2
NC_012578:1838470:1843226184322618444611236Vibrio cholerae M66-2 chromosome I, complete sequenceintegrase, phage family4e-1993.2
NC_012582:1976962:1980624198062419818591236Vibrio cholerae O395 chromosome chromosome I, complete sequenceintegrase, phage family4e-1993.2
NC_016445:1363831:1367493136749313687281236Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completephage family integrase4e-1993.2
NC_016944:1937645:1942401194240119436361236Vibrio cholerae IEC224 chromosome I, complete sequencephage family integrase4e-1993.2
NC_017270:1755552:1760299176029917615671269Vibrio cholerae LMA3984-4 chromosome chromosome I, completePhage integrase4e-1993.2
NC_008322:2077628:2081154208115420823891236Shewanella sp. MR-7, complete genomephage integrase family protein2e-1167.8
NC_008577:2115440:2118970211897021202051236Shewanella sp. ANA-3 chromosome 1, complete sequencephage integrase family protein4e-1166.6
NC_008321:1993541:1999986199998620012211236Shewanella sp. MR-4, complete genomephage integrase family protein4e-1166.6
NC_015379:908904:9688839688839701391257Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative integrase2e-0858.2
NC_010322:5293652:5298977529897753002331257Pseudomonas putida GB-1 chromosome, complete genomeintegrase family protein6e-0856.2
NC_020209:3874844:3880916388091638821751260Pseudomonas poae RE*1-1-14, complete genomeintegrase family protein2e-0754.3
NC_017986:1885613:1900835190083519020911257Pseudomonas putida ND6 chromosome, complete genomephage integrase family protein2e-0651.2