Pre_GI: BLASTP Hits

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Query: NC_012668:2258854:2294457 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 2294457, End: 2295167, Length: 711

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015497:2997275:299727529972752998030756Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeExonuclease RNase T and DNA polymerase III6e-52204
NC_004460:973738:990620990620991357738Vibrio vulnificus CMCP6 chromosome II, complete sequenceDNA polymerase III, epsilon subunit3e-23108
NC_015387:1803938:180932618093261809883558Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeExonuclease RNase T and DNA polymerase III1e-1480.1
NC_014221:266638:288241288241288915675Truepera radiovictrix DSM 17093 chromosome, complete genomeExonuclease RNase T and DNA polymerase III5e-1374.7
NC_011898:513835:5162685162685205694302Clostridium cellulolyticum H10, complete genomeDNA polymerase III, alpha subunit5e-1271.2
NC_015589:1899329:1899329189932919036064278Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeDNA polymerase III subunit alpha2e-1169.3
NC_019970:1343670:1355741135574113599734233Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeDNA polymerase III, alpha chain5e-1064.7
NC_012438:1514376:152834415283441528961618Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomeDNA polymerase III PolC-type (PolIII)1e-0963.9
NC_014210:3742112:3757353375735337591401788Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,DNA polymerase III, epsilon subunit2e-0962.8
NC_011753:3088952:309957030995703100202633Vibrio splendidus LGP32 chromosome 1, complete genomeputative DNA polymerase III, epsilon subunit3e-0962.4
NC_005945:3359598:337683333768333377780948Bacillus anthracis str. Sterne, complete genomeDNA polymerase III subunit epsilon8e-0960.8
NC_015671:1540860:1558211155821115600791869Cellvibrio gilvus ATCC 13127 chromosome, complete genomeDNA polymerase III subunit epsilon1e-0860.5
NC_015320:273979:291370291370291960591Archaeoglobus veneficus SNP6 chromosome, complete genomeDNA polymerase III subunit epsilon2e-0859.7
NC_013169:1661135:1661135166113516628891755Kytococcus sedentarius DSM 20547, complete genomeexonuclease, DNA polymerase III, epsilon subunit family3e-0858.9
NC_013192:519600:5301375301375345164380Leptotrichia buccalis DSM 1135, complete genomeDNA polymerase III, alpha subunit4e-0858.2
NC_014151:2312000:2313921231392123158161896Cellulomonas flavigena DSM 20109 chromosome, complete genomeDNA polymerase III, epsilon subunit6e-0857.8
NC_008340:2272692:2275718227571822779072190Alkalilimnicola ehrlichei MLHE-1, complete genomeputative PAS/PAC sensor protein2e-0755.8
NC_015760:61345:7446974469788634395Streptococcus salivarius CCHSS3, complete genomeDNA polymerase III polC-type (PolIII)4e-0755.5
NC_009253:2139379:2156194215619421604744281Desulfotomaculum reducens MI-1 chromosome, complete genomeDNA polymerase III subunit alpha3e-0755.5
NC_006448:59654:7279172791771854395Streptococcus thermophilus LMG 18311, complete genomeDNA polymerase III subunit alpha3e-0755.5
NC_006449:58436:7157471574759684395Streptococcus thermophilus CNRZ1066, complete genomeDNA polymerase III subunit alpha3e-0755.5
NC_009664:3718927:3738654373865437404591806Kineococcus radiotolerans SRS30216, complete genomeDNA polymerase III, epsilon subunit4e-0755.1
NC_013515:347671:3919693919693963664398Streptobacillus moniliformis DSM 12112, complete genomeDNA polymerase III, alpha subunit4e-0755.1
NC_011312:3060371:307072430707243071356633Aliivibrio salmonicida LFI1238 chromosome chromosome 1, completeDNA polymerase III subunit epsilon6e-0754.7
NC_008570:2216736:226240922624092263035627Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeDNA polymerase III, epsilon subunit5e-0754.7
NC_014727:2036340:205057920505792051475897Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,DNA polymerase iii polc-type6e-0754.3
NC_008526:343445:355948355948356853906Lactobacillus casei ATCC 334, complete genome3'-5' exonuclease and CRISPR-associated protein cas28e-0753.9
NC_014152:1430156:1433347143334714376754329Thermincola sp. JR, complete genomeDNA polymerase III, alpha subunit9e-0753.9
NC_014366:1663034:167679716767971677699903Gamma proteobacterium HdN1, complete genomehypothetical protein1e-0653.5
NC_014103:3985897:4000185400018540044954311Bacillus megaterium DSM319 chromosome, complete genomeDNA polymerase III subunit alpha1e-0653.5
NC_015514:2414617:2418229241822924200911863Cellulomonas fimi ATCC 484 chromosome, complete genomeDNA polymerase III subunit epsilon1e-0653.1
NC_015387:942974:942974942974943720747Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeDNA polymerase III, epsilon subunit2e-0653.1
NC_021182:4829000:4832933483293348372764344Clostridium pasteurianum BC1, complete genomeDNA polymerase III, alpha chain4e-0652
NC_012526:2155947:215999921599992160607609Deinococcus deserti VCD115, complete genomeputative DNA-directed DNA polymerase (DNA polymerase III, epsilon subunit)5e-0651.6
NC_012814:1465738:147026014702601470826567Bifidobacterium animalis subsp. lactis Bl-04, complete genomeDNA polymerase III alpha subunit4e-0651.6
NC_012815:1465670:147019214701921470758567Bifidobacterium animalis subsp. lactis DSM 10140, complete genomeDNA polymerase III alpha subunit4e-0651.6
NC_015588:1965787:1967662196766219693981737Isoptericola variabilis 225 chromosome, complete genomeDNA polymerase III, epsilon subunit5e-0651.2
NC_004347:2668000:268937626893762690104729Shewanella oneidensis MR-1, complete genomeDNA polymerase III, epsilon subunit9e-0650.8
NC_008577:2818546:284401128440112844739729Shewanella sp. ANA-3 chromosome 1, complete sequenceDNA polymerase III, epsilon subunit9e-0650.4