Pre_GI: BLASTP Hits

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Query: NC_012668:2258854:2277744 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 2277744, End: 2279018, Length: 1275

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012668:1623350:1640973164097316422471275Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein0876
NC_012668:160357:1702231702231714971275Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein0876
NC_009725:692237:7010037010037022291227Bacillus amyloliquefaciens FZB42, complete genomehypothetical protein3e-64246
NC_015633:2919501:292108729210872921611525Vibrio anguillarum 775 chromosome chromosome I, complete sequencetype I restriction-modification system specificity2e-33143
NC_015578:1940097:1952760195276019539021143Treponema primitia ZAS-2 chromosome, complete genomehypothetical protein9e-27121
NC_012793:1718000:1721130172113017224161287Geobacillus sp. WCH70, complete genomerestriction modification system DNA specificity domain protein1e-22108
NC_014915:2427000:2444743244474324460321290Geobacillus sp. Y412MC52 chromosome, complete genomerestriction modification system DNA specificity domain protein3e-1996.7
NC_013411:284461:2934562934562947451290Geobacillus sp. Y412MC61, complete genomerestriction modification system DNA specificity domain protein3e-1996.7
NC_015676:1530000:1544290154429015455401251Methanosalsum zhilinae DSM 4017 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein6e-1892
NC_017511:884083:8946908946908958921203Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomehypothetical protein1e-1687.8
NC_011035:968569:9786019786019798031203Neisseria gonorrhoeae NCCP11945 chromosome, complete genomehypothetical protein1e-1687.8
NC_002946:684728:6934166934166946181203Neisseria gonorrhoeae FA 1090, complete genomehypothetical protein1e-1687.8
NC_020541:4122852:4135453413545341367511299Rhodanobacter sp. 2APBS1, complete genomerestriction endonuclease S subunit1e-1584.3
NC_015847:808931:8238188238188250741257Methanococcus maripaludis XI chromosome, complete genomerestriction modification system DNA specificity domain-containing protein1e-1584.3
NC_018604:2579000:2603755260375526049511197Brachyspira pilosicoli WesB complete genometype I restriction-modification enzyme S subunit4e-1582.8
NC_017080:3317701:3326137332613733274981362Phycisphaera mikurensis NBRC 102666, complete genometype I restriction-modification system specificity subunit6e-1582.4
NC_012489:209016:2143972143972157341338Gemmatimonas aurantiaca T-27, complete genometype I restriction-modification system restriction subunit6e-1479
NC_015634:3017564:3034052303405230353621311Bacillus coagulans 2-6 chromosome, complete genomeputative type I restriction modification system, specificity protein6e-1479
NC_015740:3631326:3647442364744236487821341Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completerestriction modification system DNA specificity domain-containing protein6e-1479
NC_015856:1:1045910459117301272Collimonas fungivorans Ter331 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein4e-1376.6
NC_007948:1972290:2002112200211220034671356Polaromonas sp. JS666, complete genomeRestriction endonuclease S subunits-like4e-1376.3
NC_011498:448000:4480024480024491831182Helicobacter pylori P12, complete genometype I R-M system S protein1e-1274.7
NC_012483:1813521:1831764183176418330531290Acidobacterium capsulatum ATCC 51196, complete genometype I restriction-modification system, S subunit1e-1171.6
NC_015563:4911188:4921644492164449229751332Delftia sp. Cs1-4 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein1e-1171.2
NC_011884:3099488:3118941311894131201791239Cyanothece sp. PCC 7425, complete genomerestriction modification system DNA specificity domain protein1e-1171.2
NC_010163:614634:6229006229006241591260Acholeplasma laidlawii PG-8A chromosome, complete genometype I site-specific restriction-modification system, S (specificity) subunit2e-1170.9
NC_014315:1396990:1412173141217314136661494Nitrosococcus watsoni C-113 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein3e-1170.1
NC_015580:293803:2967442967442980541311Novosphingobium sp. PP1Y, complete genomeputative type I restriction-modification system specificity subunit5e-1169.3
NC_007406:3354000:337556333755633376264702Nitrobacter winogradskyi Nb-255, complete genomehypothetical protein6e-1169.3
NC_014011:472650:4809384809384821071170Aminobacterium colombiense DSM 12261 chromosome, complete genomerestriction modification system DNA specificity domain protein3e-1067
NC_007759:2097734:2114849211484921160631215Syntrophus aciditrophicus SB, complete genometype I restriction-modification system specificity subunit5e-1066.2
NC_014034:1418681:1425744142574414274261683Rhodobacter capsulatus SB1003 chromosome, complete genometype I restriction-modification system RcaSBIIIP subunit S4e-1066.2
NC_013943:2705983:2714857271485727160741218Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein4e-1066.2
NC_016629:3789554:3799536379953638008641329Desulfovibrio africanus str. Walvis Bay chromosome, completerestriction modification system DNA specificity domain-containing protein1e-0964.7
NC_020209:4768500:4777702477770247788471146Pseudomonas poae RE*1-1-14, complete genomerestriction modification system DNA specificity subunit1e-0964.7
NC_012779:996879:1000949100094910023341386Edwardsiella ictaluri 93-146, complete genometype I restriction-modification system, S subunit2e-0964.3
NC_014216:1197704:1203140120314012045161377Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomerestriction modification system DNA specificity domain protein6e-0962.4
NC_010175:2488000:2494129249412924954451317Chloroflexus aurantiacus J-10-fl, complete genomerestriction modification system DNA specificity domain7e-0962.4
NC_011884:1029328:1038008103800810397261719Cyanothece sp. PCC 7425, complete genomerestriction modification system DNA specificity domain protein7e-0962
NC_015578:1430112:1445653144565314468701218Treponema primitia ZAS-2 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein1e-0861.6
NC_018867:1407163:1443303144330314445141212Dehalobacter sp. CF chromosome, complete genomeType I restriction-modification system, specificity subunit S2e-0860.8
NC_015966:1661329:1673910167391016752501341Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein2e-0860.8
NC_004757:427483:4375654375654389051341Nitrosomonas europaea ATCC 19718, complete genomeRestriction modification system, type I3e-0860.5
NC_007575:973559:9842349842349854961263Sulfurimonas denitrificans DSM 1251, complete genomerestriction modification system DNA specificity subunit6e-0859.3
NC_015740:141910:1526751526751538201146Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeType I restriction modification DNA specificity domain-containing protein7e-0858.9
NC_015660:1918307:1937843193784319390361194Geobacillus thermoglucosidasius C56-YS93 chromosome, completerestriction modification system DNA specificity domain-containing protein1e-0758.5
NC_009925:2240871:2242037224203722437581722Acaryochloris marina MBIC11017, complete genometype I restriction-modification system S subunit8e-0858.5
NC_014973:3414459:3431795343179534330301236Geobacter sp. M18 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein2e-0757.4
NC_006510:372826:3786463786463796861041Geobacillus kaustophilus HTA426, complete genometype I restriction-modification system S subunit3e-0757
NC_018721:943801:9501419501419514091269Psychroflexus torquis ATCC 700755 chromosome, complete genometype I restriction-modification system, specificity subunit HdsS3e-0757
NC_013203:202008:2370032370032381631161Atopobium parvulum DSM 20469, complete genomerestriction modification system DNA specificity domain protein3e-0756.6
NC_014650:1893758:1911301191130119125301230Geobacillus sp. Y4.1MC1 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein6e-0755.8
NC_007484:2045500:2045515204551520469661452Nitrosococcus oceani ATCC 19707, complete genomeRestriction modification system DNA specificity domain7e-0755.5
NC_020210:1275031:1285198128519812864541257Geobacillus sp. GHH01, complete genomerestriction modification system DNA specificity domain containing protein7e-0755.5
NC_016937:529459:5456055456055468311227Francisella tularensis subsp. tularensis TI0902 chromosome,Type I restriction-modification system S subunit1e-0655.1
NC_016933:608889:6215126215126227381227Francisella tularensis TIGB03 chromosome, complete genomeType I restriction-modification system S subunit1e-0655.1
NC_008245:529378:5455355455355467611227Francisella tularensis subsp. tularensis FSC 198, complete genomehypothetical protein1e-0655.1
NC_006570:529426:5455835455835468091227Francisella tularensis subsp. tularensis Schu 4, complete genomehypothetical protein1e-0655.1
NC_007951:4608560:4610109461010946114251317Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative HsdS protein3e-0653.5
NC_013410:1651000:1662625166262516638511227Fibrobacter succinogenes subsp. succinogenes S85 chromosome,restriction modification system DNA specificity domain-containing protein6e-0652.4
NC_014970:530748:538631538631539281651Mycoplasma haemofelis str. Langford 1, complete genometype I restriction-modification system, S subunit7e-0652.4