Pre_GI: BLASTP Hits

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Query: NC_012668:2258854:2261340 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 2261340, End: 2262593, Length: 1254

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004603:1961432:1962386196238619636391254Vibrio parahaemolyticus RIMD 2210633 chromosome I, completeserine transporter0690
NC_013508:2356865:2380002238000223812221221Edwardsiella tarda EIB202, complete genomeprobable serine transporter8e-108390
NC_020064:1611820:1613277161327716145751299Serratia marcescens FGI94, complete genomeserine transporter1e-106387
NC_012779:2424967:2440301244030124415931293Edwardsiella ictaluri 93-146, complete genomeserine transporter family protein2e-105382
NC_009901:2915939:2921392292139229226841293Shewanella pealeana ATCC 700345, complete genomeputative serine transporter4e-99362
NC_012039:53497:7070870708720301323Campylobacter lari RM2100, complete genomeL-serine transporter1e-88327
NC_020272:3396800:3419765341976534210691305Bacillus amyloliquefaciens IT-45, complete genomeThreonine/serine transporter tdcC H(+)/threonine-serine symporter1e-85317
NC_011741:3344746:3350147335014733514781332Escherichia coli IAI1 chromosome, complete genomethreonine/serine transporter TdcC2e-82306
NC_011415:3523364:3531709353170935330401332Escherichia coli SE11 chromosome, complete genomethreonine/serine transporter TdcC2e-82306
NC_011748:3608917:3617262361726236185931332Escherichia coli 55989, complete genomethreonine/serine transporter TdcC2e-82306
NC_010658:3014371:3022117302211730234481332Shigella boydii CDC 3083-94, complete genomethreonine/serine transporter2e-82306
CP002516:613462:6233526233526246831332Escherichia coli KO11, complete genomeserine transporter2e-82306
CP002185:3475991:3481390348139034827211332Escherichia coli W, complete genomeL-threonine/L-serine transporter2e-82306
CU928145:3608917:3617262361726236185931332Escherichia coli 55989 chromosome, complete genomeL-threonine/L-serine transporter2e-82306
CU928160:3344746:3350147335014733514781332Escherichia coli IAI1 chromosome, complete genomeL-threonine/L-serine transporter2e-82306
NC_007613:2981829:2985794298579429871251332Shigella boydii Sb227, complete genomeanaerobically inducible L-threonine, L-serine permease2e-82306
NC_014618:586240:6054046054046067351332Enterobacter cloacae SCF1 chromosome, complete genomeserine transporter3e-82306
NC_016902:613462:6233526233526246831332Escherichia coli KO11FL chromosome, complete genomeserine transporter2e-82306
NC_000913:3256307:3261708326170832630391332Escherichia coli K12, complete genomeL-threonine/L-serine transporter1e-82306
NC_013941:3884725:3893070389307038944011332Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeThreonine/serine transporter tdcC (H(+)/threonine-serine symporter)1e-82306
NC_012967:3191319:3196720319672031980511332Escherichia coli B str. REL606 chromosome, complete genomethreonine/serine transporter TdcC1e-82306
NC_012947:630757:6424886424886438191332Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completethreonine/serine transporter TdcC1e-82306
NC_012759:3143455:3148856314885631501871332Escherichia coli BW2952 chromosome, complete genomethreonine/serine transporter TdcC1e-82306
NC_009801:3595001:3598563359856335998941332Escherichia coli E24377A, complete genomethreonine/serine transporter1e-82306
NC_010473:3354052:3359453335945333607841332Escherichia coli str. K-12 substr. DH10B, complete genomeL-threonine/L-serine transporter1e-82306
NC_009800:3307123:3312524331252433138551332Escherichia coli HS, complete genomethreonine/serine transporter1e-82306
NC_002695:3994970:4003315400331540046461332Escherichia coli O157:H7 str. Sakai, complete genomeanaerobically inducible L-threonine/L-serine permease1e-82306
AC_000091:3258377:3263541326354132648721332Escherichia coli W3110 DNA, complete genomeL-threonine/L-serine transporter1e-82306
NC_011750:3768692:3777037377703737783681332Escherichia coli IAI39 chromosome, complete genomethreonine/serine transporter TdcC1e-82306
NC_008258:3224721:3230122323012232314531332Shigella flexneri 5 str. 8401, complete genomeanaerobically inducible L-threonine, L-serine permease3e-82305
NC_010468:613812:6255436255436268741332Escherichia coli ATCC 8739, complete genomeserine transporter3e-82305
NC_010498:3488513:3493914349391434952451332Escherichia coli SMS-3-5, complete genomethreonine/serine transporter3e-82305
NC_004741:3240909:3246310324631032476411332Shigella flexneri 2a str. 2457T, complete genomeanaerobically inducible permease for L-threonine and L-serine3e-82305
NC_011751:3710786:3719132371913237204631332Escherichia coli UMN026 chromosome, complete genomethreonine/serine transporter TdcC3e-82305
NC_004337:3249791:3255192325519232565231332Shigella flexneri 2a str. 301, complete genomeanaerobically inducible permease for L-threonine and L-serine3e-82305
NC_017328:3289853:3295254329525432965851332Shigella flexneri 2002017 chromosome, complete genomeThreonine/serine transporter tdcC (H(+)/threonine-serine symporter)3e-82305
NC_010336:852915:8574248574248586471224Francisella philomiragia subsp. philomiragia ATCC 25017, completeserine permease1e-78293
NC_012779:957558:9661919661919675221332Edwardsiella ictaluri 93-146, complete genomethreonine/serine transporter TdcC (+)4e-77288
NC_012590:637651:6517406517406530561317Corynebacterium aurimucosum ATCC 700975, complete genomethreonine/serine transporter9e-58224
NC_011750:3407500:3414381341438134156101230Escherichia coli IAI39 chromosome, complete genomeputative transporter1e-54214
AC_000091:2976293:2984503298450329857321230Escherichia coli W3110 DNA, complete genomepredicted transporter1e-54214
NC_002655:3769643:3775547377554737767761230Escherichia coli O157:H7 EDL933, complete genomeputative transporter protein1e-54214
AP010958:3474077:3480903348090334821321230Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted transporter1e-54214
NC_000913:2975659:2983869298386929850981230Escherichia coli K12, complete genomepredicted transporter1e-54214
NC_002695:3702344:3708248370824837094771230Escherichia coli O157:H7 str. Sakai, complete genomeputative transporter protein1e-54214
NC_009800:2995958:3004168300416830053971230Escherichia coli HS, complete genomeserine transporter family protein1e-54214
NC_010468:906957:9336279336279348561230Escherichia coli ATCC 8739, complete genomeserine transporter1e-54214
CP002516:903241:9289009289009301291230Escherichia coli KO11, complete genomeserine transporter1e-54214
CU928160:3030324:3037150303715030383791230Escherichia coli IAI1 chromosome, complete genomeputative transporter1e-54214
CU928145:3196173:3202999320299932042281230Escherichia coli 55989 chromosome, complete genomeputative transporter1e-54214
CP002185:3167738:3175948317594831771771230Escherichia coli W, complete genomepredicted transporter1e-54214
NC_009801:3175714:3182540318254031837691230Escherichia coli E24377A, complete genomeserine transporter family protein1e-54214
NC_011748:3196173:3202999320299932042281230Escherichia coli 55989, complete genomeputative transporter1e-54214
NC_016822:3282654:3290901329090132921301230Shigella sonnei 53G, complete genometransporter protein9e-55214
NC_007384:3151344:3158164315816431593931230Shigella sonnei Ss046, complete genomeputative transporter protein9e-55214
NC_016902:903241:9289009289009301291230Escherichia coli KO11FL chromosome, complete genomeserine transporter1e-54214
NC_013941:3540420:3546324354632435475531230Escherichia coli O55:H7 str. CB9615 chromosome, complete genometransporter protein1e-54214
NC_013361:3867558:3874384387438438756131230Escherichia coli O26:H11 str. 11368 chromosome, complete genometransporter1e-54214
NC_013353:3474077:3480903348090334821321230Escherichia coli O103:H2 str. 12009, complete genometransporter1e-54214
NC_013008:3761467:3767371376737137686001230Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransporter1e-54214
NC_012759:2862807:2871017287101728722461230Escherichia coli BW2952 chromosome, complete genomeputative transporter1e-54214
NC_011741:3030324:3037150303715030383791230Escherichia coli IAI1 chromosome, complete genomeputative transporter1e-54214
NC_011415:3217796:3224622322462232258511230Escherichia coli SE11 chromosome, complete genomeputative transport protein1e-54214
NC_011353:3805819:3812645381264538138741230Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeserine transporter family protein1e-54214
NC_010473:3069529:3077739307773930789681230Escherichia coli str. K-12 substr. DH10B, complete genomepredicted transporter1e-54214
NC_013364:3552284:3559116355911635603451230Escherichia coli O111:H- str. 11128, complete genomeputative transporter2e-54213
NC_011751:3285646:3292474329247432937031230Escherichia coli UMN026 chromosome, complete genomeputative transporter2e-54213
NC_011745:3245000:3248644324864432498041161Escherichia coli ED1a chromosome, complete genomeputative transporter1e-53210
NC_014121:4299500:4299633429963343008021170Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completespore germination protein3e-53209
NC_015696:1749863:1749863174986317511251263Francisella sp. TX077308 chromosome, complete genomeserine transporter3e-42172
NC_010336:213148:2306662306662319281263Francisella philomiragia subsp. philomiragia ATCC 25017, completeserine permease2e-41170
NC_006570:707280:7299807299807312421263Francisella tularensis subsp. tularensis Schu 4, complete genomeserine transporter1e-40167
NC_008245:707984:7299327299327311941263Francisella tularensis subsp. tularensis FSC 198, complete genomeserine transporter1e-40167
NC_016933:783938:8058868058868071481263Francisella tularensis TIGB03 chromosome, complete genomeSerine transporter1e-40167
NC_016937:707279:7299797299797312411263Francisella tularensis subsp. tularensis TI0902 chromosome,Serine transporter1e-40167
NC_004337:3590323:3671626367162636728971272Shigella flexneri 2a str. 301, complete genomeputative transporter protein3e-22106
NC_012962:820909:8386288386288399501323Photorhabdus asymbiotica, complete genomeputative haaap family transport protein3e-1789.7
NC_006526:1472781:1484217148421714855451329Zymomonas mobilis subsp. mobilis ZM4, complete genomeputative transport protein3e-1789.7
NC_015873:380485:4068684068684082051338Megasphaera elsdenii DSM 20460, complete genomeserine transporter2e-1584.3
NC_010468:613812:6325506325506338811332Escherichia coli ATCC 8739, complete genomeserine transporter2e-1584
NC_010658:3014371:3029900302990030312311332Shigella boydii CDC 3083-94, complete genomeserine transporter family protein3e-1583.2
NC_013941:3884725:3886063388606338873941332Escherichia coli O55:H7 str. CB9615 chromosome, complete genometransporter permease5e-1582.8
NC_011748:3608917:3610255361025536115231269Escherichia coli 55989, complete genomeputative transporter4e-1582.8
CP002516:613462:6303596303596316901332Escherichia coli KO11, complete genomeserine transporter4e-1582.8
CU928145:3608917:3610255361025536115231269Escherichia coli 55989 chromosome, complete genomeputative transporter4e-1582.8
NC_011750:3768692:3770030377003037712981269Escherichia coli IAI39 chromosome, complete genomeputative transporter4e-1582.8
NC_011415:3523364:3524702352470235260331332Escherichia coli SE11 chromosome, complete genomeputative transport protein4e-1582.8
NC_012947:630757:6494966494966508271332Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeserine transporter4e-1582.8
NC_016902:613462:6303596303596316901332Escherichia coli KO11FL chromosome, complete genomeserine transporter4e-1582.8
NC_002695:3994970:3996308399630839976391332Escherichia coli O157:H7 str. Sakai, complete genomeputative transport system permease protein5e-1582.4
NC_011751:3710786:3712124371212437133921269Escherichia coli UMN026 chromosome, complete genomeputative transporter1e-1481.3
NC_014618:586240:6130166130166143471332Enterobacter cloacae SCF1 chromosome, complete genomemembrane transport protein2e-1480.5