Pre_GI: BLASTN Hits

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Query: NC_012667:703852 Vibrio cholerae MJ-1236 chromosome 2, complete genome

Start: 703852, End: 735352, Length: 31501

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009348:1064664*1064664109873434071Aeromonas salmonicida subsp. salmonicida A449, complete genome2e-20109BLASTN svgBLASTP svg
NC_009465:938378*93837897956141184Candidatus Vesicomyosocius okutanii HA, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_014500:20191132019113204779528683Dickeya dadantii 3937 chromosome, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_012912:32591332591334833122419Dickeya zeae Ech1591, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_000913:27207127207130179729727Escherichia coli K12, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_010473:24742924742927209924671Escherichia coli str. K-12 substr. DH10B, complete genome2e-1489.7BLASTN svgBLASTP svg
AC_000091:27332527332530179728473Escherichia coli W3110 DNA, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_006371:1997954*1997954202569227739Photobacterium profundum SS9 chromosome 2, complete sequence2e-1075.8BLASTN svgBLASTP svg
NC_012962:16616831661683171390552223Photorhabdus asymbiotica, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_012962:34999003499900355871558816Photorhabdus asymbiotica, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_012962:11890211189021120825819238Photorhabdus asymbiotica, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_012962:10681021068102112169753596Photorhabdus asymbiotica, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_012962:44270004427000445406927070Photorhabdus asymbiotica, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_012962:10415181041518106637824861Photorhabdus asymbiotica, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_012962:39337153933715398542551711Photorhabdus asymbiotica, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_012962:86929586929589218422890Photorhabdus asymbiotica, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_012962:34636443463644349841134768Photorhabdus asymbiotica, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_012962:35680463568046362047652431Photorhabdus asymbiotica, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_012962:30600633060063308387423812Photorhabdus asymbiotica, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_012962:18270001827000184987822879Photorhabdus asymbiotica, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_012962:30307263030726305134020615Photorhabdus asymbiotica, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_011083:3915500*3915500393961024111Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,4e-0661.9BLASTN svgBLASTP svg
NC_010102:38515003851500387645224953Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,4e-0661.9BLASTN svgBLASTP svg
NC_003198:3924952*3924952395155226601Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-0869.9BLASTN svgBLASTP svg
NC_004631:3910451*3910451393705126601Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-0869.9BLASTN svgBLASTP svg
NC_003197:3902500*3902500392838425885Salmonella typhimurium LT2, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_009997:51882215188221522795839738Shewanella baltica OS195, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_008322:46110004611000462903818039Shewanella sp. MR-7, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_018868:61911361911367007150959Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_015633:46114346114348763326491Vibrio anguillarum 775 chromosome chromosome I, complete sequence6e-48200BLASTN svgBLASTP svg
NC_015633:2327500*2327500235796830469Vibrio anguillarum 775 chromosome chromosome I, complete sequence4e-43184BLASTN svgBLASTP svg
NC_015633:29195012919501294340723907Vibrio anguillarum 775 chromosome chromosome I, complete sequence7e-20107BLASTN svgBLASTP svg
NC_015633:33800033800035668318684Vibrio anguillarum 775 chromosome chromosome I, complete sequence05164BLASTN svgBLASTP svg
NC_015637:89184289184291186720026Vibrio anguillarum 775 chromosome chromosome II, complete sequence5e-64254BLASTN svgBLASTP svg
NC_002505:86078986078988990629118Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete4e-40174BLASTN svgBLASTP svg
NC_002505:16853216853220059932068Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete027700BLASTN svgBLASTP svg
NC_004459:20254362025436205524629811Vibrio vulnificus CMCP6 chromosome I, complete sequence4e-18101BLASTN svgBLASTP svg