Pre_GI: BLASTN Hits

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Query: NC_012667:46432 Vibrio cholerae MJ-1236 chromosome 2, complete genome

Start: 46432, End: 70142, Length: 23711

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_002506:207097*20709723205424958Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete039290BLASTN svgBLASTP svg
NC_002506:37062937062943982869200Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete01229BLASTN svgBLASTP svg
NC_002505:23856923856927414635578Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete3e-92347BLASTN svgBLASTP svg
NC_013961:29323482932348295697724630Erwinia amylovora, complete genome3e-21111BLASTN svgBLASTP svg
NC_013457:979102*97910299831619215Vibrio sp. Ex25 chromosome 2, complete genome2e-19105BLASTN svgBLASTP svg
NC_012691:2614603*26146032727599112997Tolumonas auensis DSM 9187, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_013508:18628961862896188607023175Edwardsiella tarda EIB202, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_008577:1885809*1885809190718721379Shewanella sp. ANA-3 chromosome 1, complete sequence1e-1179.8BLASTN svgBLASTP svg
NC_009348:16124416124417922017977Aeromonas salmonicida subsp. salmonicida A449, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_014364:2562281*2562281258498622706Spirochaeta smaragdinae DSM 11293 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009997:35831663583166360265419489Shewanella baltica OS195, complete genome3e-0661.9BLASTN svgBLASTP svg